Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16h01
         (512 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.61 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   1.1  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   4.3  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   5.7  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   9.9  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 0.61
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 450 CVIRLAKGRVWIVKSIIRTSVGGF 379
           C+ R A GR W VK++     G F
Sbjct: 498 CIFRTANGRGWGVKTMKTIKKGSF 521


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +1

Query: 64  QVQAAVNCTETGAGRFADDDDTTCQNYTLCVYDTTTLDYLFYNY 195
           +++ + N   TG+ +  ++  T   N  +  YD T  D+ +Y Y
Sbjct: 299 EIEISQNSVSTGSDK--ENHKTEEPNDEVATYDNTPRDFPYYMY 340


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 314 AMYPSSVQTVVFAV 273
           A+YPSSVQ +   V
Sbjct: 221 ALYPSSVQVIALGV 234


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 11/47 (23%), Positives = 22/47 (46%)
 Frame = -3

Query: 402 IRTSVGGFCECTIYSYAFDVTGTIRGARIGDVPVFGTNGSICGRHIA 262
           +R  V  FC+   + +  D    +    +G + +FG + +  GR I+
Sbjct: 284 LRMGVASFCKAFPWHFVVDRQLELVQLGVGFMRIFGHHLNRLGREIS 330


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +2

Query: 104 ADLPMTMTRLVKTTRFASTILRL*IICSTTINV 202
           A LP+T   L +  +  S + R  +    T+N+
Sbjct: 365 ATLPITFRCLEENNKIDSRVTRFVVAVGATVNM 397


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,970
Number of Sequences: 438
Number of extensions: 3406
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)