Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16g18
         (572 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    26   0.30 
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    24   1.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   2.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   3.8  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   5.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   6.6  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   8.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   8.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   8.7  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   8.7  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = -2

Query: 382 YITPYLSTHYHTYQGHSC*QCPLLHSNFQVAYSGGHYETYTEQVHPH 242
           + TP+   H H    H     PL HS++  A   GH    T   HPH
Sbjct: 427 HATPH-HHHSHAATPHHQHSTPLAHSSYPAAIQIGH----TPHHHPH 468


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +2

Query: 53  FCSQSIHGGSDEMQKKLTKHIE 118
           FC++  HGGS + +K + +  +
Sbjct: 94  FCAEIAHGGSSKKRKSIVERAQ 115


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -1

Query: 452 SMQQKRSQQTLIELGSDVYLSYPIYNPISEHPLP 351
           +++++R ++  I +  D  L+ P  NP+S  P P
Sbjct: 416 AVEEERQREYGIRVERDPILTPPSSNPVSPVPSP 449



 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 367 LSTHYHTYQGHSC*QCPLLHSNFQV 293
           L+ HY T+ G    QC     +F V
Sbjct: 107 LTRHYRTHTGEKPYQCEYCSKSFSV 131


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +2

Query: 92  QKKLTKHIEIAEDVQNKNYSSVTVEDALTVTGFGKYNFGLLLVC 223
           + +L K   I   + + ++   T+ DAL  T   K  FG +  C
Sbjct: 138 ESQLIKRHPIVTIMGHVDHGKTTLLDALRNTSIAKSEFGGITQC 181


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +2

Query: 287 VCDLEITMQQRALLTAVPLIGVVMGAQIWGYISDTRGRRLTLVLSMSVGFVFA 445
           V + + T Q+R LL+ +P    V   Q  G   DT+ +++ +    +V  ++A
Sbjct: 225 VIEEQSTEQERLLLSVLPEHVAVKMRQDLGASLDTQFKKIYMSRHENVSILYA 277


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -1

Query: 62  ANKKKPRVYRPTEPDAQ 12
           A KKK R  RP   DAQ
Sbjct: 627 AQKKKHRAIRPEPIDAQ 643


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 403 TSTSRIRYITPYLSTHYHTYQG 338
           ++  RIR +T   +T+  TY+G
Sbjct: 554 SNNDRIRQVTKCKATNEETYRG 575


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 403 TSTSRIRYITPYLSTHYHTYQG 338
           ++  RIR +T   +T+  TY+G
Sbjct: 554 SNNDRIRQVTKCKATNEETYRG 575


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 403 TSTSRIRYITPYLSTHYHTYQG 338
           ++  RIR +T   +T+  TY+G
Sbjct: 554 SNNDRIRQVTKCKATNEETYRG 575


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +2

Query: 80  SDEMQKKLTKHIEIAEDVQNKNYSSVTVEDALTV 181
           S+E  K++T      ED+ +  +  +T    LTV
Sbjct: 353 SEEDLKRITNQPSEGEDISDYKFRHITEITILTV 386


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,274
Number of Sequences: 438
Number of extensions: 3506
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)