Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16g15
         (645 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    27   0.12 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   0.36 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    26   0.36 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   4.4  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    22   5.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.8  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 309 SRPVWLYQPWAMPSWFG 359
           S PVW +QPW   +W G
Sbjct: 549 SAPVWRFQPWGPFTWGG 565


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -2

Query: 641 LYPSIASDIRNSTATDSRRPTPGQAPSMPLYSITFRTPVPTPSI 510
           +Y  I       TA  S     G AP M LYS   +T  P P++
Sbjct: 396 MYQCIVRRSEGDTAQASAELQLGNAPPMLLYSFIEQTLQPGPAV 439


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -2

Query: 641 LYPSIASDIRNSTATDSRRPTPGQAPSMPLYSITFRTPVPTPSI 510
           +Y  I       TA  S     G AP M LYS   +T  P P++
Sbjct: 396 MYQCIVRRSEGDTAQASAELQLGNAPPMLLYSFIEQTLQPGPAV 439


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 164 YFLAMGAGGSDPSLIGVAT 220
           Y   +G+GGS PSL  +AT
Sbjct: 382 YGYPIGSGGSFPSLYPMAT 400


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 359 AKPGRHRPGLIEPDRP 312
           AKPG +RP  I   RP
Sbjct: 263 AKPGNNRPVYIPQPRP 278


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/27 (33%), Positives = 11/27 (40%)
 Frame = -1

Query: 600 HRQPPPDPWPGPFHAIVLNNIPYTGTN 520
           H  P P   PGP    +L N  +   N
Sbjct: 464 HHHPHPPETPGPQVETILQNACFCARN 490


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,782
Number of Sequences: 438
Number of extensions: 4950
Number of successful extensions: 38
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)