Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16g04
         (613 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   5.4  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   5.4  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   9.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   9.5  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              21   9.5  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    21   9.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.5  

>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -2

Query: 531 RSGEKLSKHNIKMSTNDYLIIRDHEDYSIRNVGYNVI 421
           R+  + SK    +S+N+Y     + +Y+ + + YN+I
Sbjct: 292 RTERERSKETKIISSNNYNYKNYNNNYNSKKLYYNII 328


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -2

Query: 531 RSGEKLSKHNIKMSTNDYLIIRDHEDYSIRNVGYNVI 421
           R+  + SK    +S+N+Y     + +Y+ + + YN+I
Sbjct: 303 RTERERSKETKIISSNNYNYKNYNNNYNSKKLYYNII 339


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 468 RDHEDYSIRNVGYNVII 418
           R HE   +RNVG + ++
Sbjct: 284 RKHEQRLLRNVGVHTVV 300


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +3

Query: 414 HLLSHYIPHFEYYNLRGH 467
           HL +H++ H  ++ + GH
Sbjct: 275 HLDNHHVHHANHHAILGH 292


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +3

Query: 147 CASWCGLQKYCLVAGRM*YKFTCGC*RTSYI 239
           C  +C  Q    VA    +   C C R SY+
Sbjct: 69  CEGFCNSQVQPSVASTTGFSKECYCCRESYL 99


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +3

Query: 147 CASWCGLQKYCLVAGRM*YKFTCGC*RTSYI 239
           C  +C  Q    VA    +   C C R SY+
Sbjct: 69  CEGFCNSQVQPSVASTTGFSKECYCCRESYL 99


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 272 NKMLRHRNYPKNVRGPLT 219
           NK   H NYP +  G LT
Sbjct: 582 NKRSIHNNYPVHTFGRLT 599


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 353 NKIKFCLCFHLYHQREPDLAP 415
           +K  FCL   L H  +P L+P
Sbjct: 425 DKCYFCLDGKLPHDDQPPLSP 445


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,855
Number of Sequences: 438
Number of extensions: 3945
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)