Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16f19
         (422 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0823 + 21765960-21766064,21766166-21766327,21766616-217667...    28   3.6  
10_01_0046 - 635010-635431,635522-635684,637390-637815                 27   8.2  
01_04_0124 + 16359695-16359734,16360217-16360453,16361133-163621...    27   8.2  

>07_03_0823 +
           21765960-21766064,21766166-21766327,21766616-21766741,
           21766831-21766956,21767519-21767698,21768204-21768452
          Length = 315

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 319 QSIEMLSAFCTCIWFLAF 266
           QSI++L   C CIW L+F
Sbjct: 86  QSIQLLYETCLCIWLLSF 103


>10_01_0046 - 635010-635431,635522-635684,637390-637815
          Length = 336

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 120 HKSDKAPCHFVKSKLFLMSNVKK*DPMLEIIY 215
           H   +  C FV  +L+  SN  + DP ++  Y
Sbjct: 199 HTFGRVQCQFVTDRLYNFSNTGRPDPTMDAAY 230


>01_04_0124 +
           16359695-16359734,16360217-16360453,16361133-16362104,
           16362211-16362398,16362564-16363942,16364024-16365047,
           16365171-16365566,16367484-16367999,16368085-16368226,
           16369409-16369553,16371351-16371432,16371851-16371895,
           16372018-16372140
          Length = 1762

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 10/47 (21%), Positives = 23/47 (48%)
 Frame = -1

Query: 308 NVIRILYLYLVPCFFNFNHQFINKRXLIFSYINYFKHGILFLYIXHQ 168
           +V+ + YL     FF    + + ++  IF Y+  +   ++ L + +Q
Sbjct: 549 DVLHLGYLGFALVFFRMRLEILKRKNKIFKYLRMYNFALIVLSLAYQ 595


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,931,040
Number of Sequences: 37544
Number of extensions: 119566
Number of successful extensions: 205
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)