Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16f19
         (422 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13019-12|AAC24448.1|  316|Caenorhabditis elegans Serpentine rec...    28   2.4  
U41996-1|AAA83471.2|  306|Caenorhabditis elegans Serpentine rece...    27   4.2  
AF016415-6|AAB65267.1|  283|Caenorhabditis elegans Lysozyme prot...    27   7.3  

>U13019-12|AAC24448.1|  316|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 8 protein.
          Length = 316

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = -1

Query: 308 NVIRILYLYLVPCFFNFNHQFINKRXLIF----SYINYFK 201
           N  RIL L L+  FF   +  I+K+ LIF     YINY K
Sbjct: 146 NFSRILILNLIAPFFFIWNTIISKKVLIFYFGGFYINYLK 185


>U41996-1|AAA83471.2|  306|Caenorhabditis elegans Serpentine
           receptor, class sx protein22 protein.
          Length = 306

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = -2

Query: 328 REIQSIEMLSAFCTCIWFLAFLILITNSLINGX*YFLI*IISSMGSYFFTXDIKNSF 158
           R ++S+ ++ +   C WFLA L++    ++     F+I + S  GS        N F
Sbjct: 207 RILKSMIVVISLYVCTWFLALLVIFCTYVLKMDNPFVIALESVTGSLILCNSSMNIF 263


>AF016415-6|AAB65267.1|  283|Caenorhabditis elegans Lysozyme protein
           7 protein.
          Length = 283

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = +3

Query: 237 FINELVIKIKKARNQIQVQNA----DNISIDWISLRNTVCLWF*RHYSG 371
           FIN +V + +++   + +  +    + I+  W ++ N V LW+   YSG
Sbjct: 165 FINSIVSRARQSGLTVGIYTSYYDWNQITTGWSNIGNDVLLWYWNVYSG 213


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,689,503
Number of Sequences: 27780
Number of extensions: 135609
Number of successful extensions: 383
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)