Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16f17
         (523 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    29   0.32 
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    26   3.0  
SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos...    25   5.2  

>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -2

Query: 408 CLYFNQASNPSKQSNVMHRHIINFI--KFIW 322
           CLYF    NP K S V++ H++  +  KFI+
Sbjct: 584 CLYFAVCDNPYKPSQVIYDHLLGHVDSKFIF 614


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 379 WI*SLVKIQTQNCVFGKTFNLQWKKNN 459
           WI + + I     VFG T  L WKK N
Sbjct: 425 WIITFIGIALGPAVFGITLTLFWKKMN 451


>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
           glycosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 315 THTKNITLLIIINDTDSQICFHRIISSNKP 226
           T+TK +T LII+N+ D     +R      P
Sbjct: 36  TYTKTLTSLIIVNEGDEPQNTYRYFQQTSP 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,093,206
Number of Sequences: 5004
Number of extensions: 40437
Number of successful extensions: 99
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)