Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16f17
         (523 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   4.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   4.4  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    21   5.8  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    21   5.8  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    21   5.8  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   7.7  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 402 YFNQASNPSKQSNV-MHRHIINFIKFIWWY 316
           +++   N   +SN+ M++      KF+WWY
Sbjct: 56  WYDVGRNYDMESNMDMYKDKNVVQKFLWWY 85


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 402 YFNQASNPSKQSNV-MHRHIINFIKFIWWY 316
           +++   N   +SN+ M++      KF+WWY
Sbjct: 56  WYDVGRNYDMESNMDMYKDKNVVQKFLWWY 85


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 11  YFVFKIYISFNRRKCSKL 64
           YFV K+Y +    KC KL
Sbjct: 109 YFVGKMYFNLIDTKCYKL 126


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 11  YFVFKIYISFNRRKCSKL 64
           YFV K+Y +    KC KL
Sbjct: 114 YFVGKMYFNLIDTKCYKL 131


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 11  YFVFKIYISFNRRKCSKL 64
           YFV K+Y +    KC KL
Sbjct: 114 YFVGKMYFNLIDTKCYKL 131


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = +1

Query: 187 SNESIVRYITSFYWFI*RYNSMETNLAVRIIYNNQERNIFSMCIPPNKFY 336
           SN++I       Y +  +YN    N   ++ Y N   NI  + +P   +Y
Sbjct: 86  SNKTIHNNNNYKYNYNNKYNYNNNNYNKKLYYKNYIINIEQIPVPVPVYY 135


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,956
Number of Sequences: 438
Number of extensions: 2673
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)