Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16f14
         (610 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    26   0.33 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   1.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.3  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               23   2.3  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    23   2.3  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    23   2.3  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    23   2.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.3  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   5.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   5.4  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   7.1  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    21   9.4  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   9.4  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +1

Query: 262 EANIYDV-DSWSLLVREAQARNINDVRTMYEKLITAFPTTGRYWK 393
           ++  YDV  SW  L+ E   R  +D R +  +  T F  T +Y+K
Sbjct: 261 QSETYDVLRSWRNLMDEHSNRTNSDPRMILTEAYTEFNLTIKYYK 305


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 357 DNGIPDHRTLLENIYRT 407
           DN +  H  LL N+Y T
Sbjct: 395 DNALASHNNLLNNVYST 411


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 486 IALFFLNLLSLYT-DLFDSFKISRFHLLFDIYF 391
           I LF +    +Y   L DS+ +S F LLF ++F
Sbjct: 429 IGLFCITEGGMYVFQLLDSYAVSGFCLLFLMFF 461


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 486 IALFFLNLLSLYT-DLFDSFKISRFHLLFDIYF 391
           I LF +    +Y   L DS+ +S F LLF ++F
Sbjct: 482 IGLFCITEGGMYVFQLLDSYAVSGFCLLFLMFF 514


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 523 CLFLFLPIVNITDSFV 476
           C++LFL ++ IT  FV
Sbjct: 7   CIYLFLSVILITSYFV 22


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 466 LTLFVY*PFRLFQNFSLSS 410
           L++F Y P R+ QNF + S
Sbjct: 59  LSVFTYRPLRIVQNFFIVS 77


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 466 LTLFVY*PFRLFQNFSLSS 410
           L++F Y P R+ QNF + S
Sbjct: 59  LSVFTYRPLRIVQNFFIVS 77


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 466 LTLFVY*PFRLFQNFSLSS 410
           L++F Y P R+ QNF + S
Sbjct: 59  LSVFTYRPLRIVQNFFIVS 77


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 270  HIRCGLLVIASKRSPGPKHQR-CPNHVREVDNGIP 371
            H+   ++   ++   GP H   C N++RE+ +G P
Sbjct: 913  HLTVAVVQYKTQDGFGPIHYGVCSNYLREISDGEP 947


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 504 GKNRNRQILYFNYSMLVRGIPRRYFQKNVY 593
           G   N  ++    S LVRG PR    K V+
Sbjct: 31  GNVHNDPLVVETTSGLVRGFPRTVLDKEVH 60


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 324 HQRCPNHVREVDNGIPDHRTL 386
           H + P+ +RE+   IPD RTL
Sbjct: 378 HPQHPDILRELLKKIPDLRTL 398


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 504 GKNRNRQILYFNYSMLVRGIPRRYFQKNVY 593
           G   N  ++    S LVRG PR    K V+
Sbjct: 31  GNVHNDPLVVETTSGLVRGFPRTVLDKEVH 60


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 274 ICWLRLHAGRGIGVHYPN 221
           ICW   HA R + V+  N
Sbjct: 296 ICWAPFHAQRLLAVYAQN 313


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -1

Query: 229 YPNQCRRFHLQMPF*SLRLRLSIWF*VRATVFRR 128
           Y + C R +L +       ++ IWF  R T +++
Sbjct: 32  YLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 65


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 111 TDCLWTHYSQC*NRFKTI 58
           TDCL +  +QC +  K I
Sbjct: 172 TDCLRSELAQCESNIKVI 189


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,691
Number of Sequences: 438
Number of extensions: 3902
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)