Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16f12
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    33   0.044
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    28   0.95 
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    28   1.3  
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   3.8  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    26   3.8  
SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces pom...    25   6.7  
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces...    25   6.7  
SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyce...    25   8.9  
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.9  
SPAC4H3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   8.9  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    25   8.9  

>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 32.7 bits (71), Expect = 0.044
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -2

Query: 521 QYLPPRNPSSPPVWLFGTTATASKENVSNLLTSLTVAMTLLSFGC 387
           +Y  PR P   PV+LF       +EN+  L  SL ++++LL   C
Sbjct: 112 EYTLPRPPQLTPVFLFVVDVCQDEENLQALKDSLIISLSLLPPEC 156


>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 287 AEWKLELTAL*DWPAEKRTLASSPR-RSYCYYHSNSQTTI 403
           AEW +  T L DW +E  T+AS     SY  Y +NS+T +
Sbjct: 259 AEWLMCNTMLLDW-SEMETVASDLLIHSYIAYENNSETPL 297


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -1

Query: 543 GLVESGMTISTTTQPIKSSGVVIRNYSHSFEGERLQSTDVSDGCDDPIVVWLL 385
           G+ ES M +     P+++SG    NYS+  E      T+ +D   D +  W L
Sbjct: 536 GINESNMPMLQNGLPLRTSGDHPSNYSNLIENSSTSDTNNADNGMDVMGNWQL 588


>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +1

Query: 391 PNDNRVIATVRDVSRLETFSFEAVAVVPNNHTGGLDGLRGGRY 519
           P +N        V+  ETFS   V V+P   T   DG+RG  Y
Sbjct: 158 PKNNPTTVYSGTVATTETFSSSTVVVIP---TAICDGVRGLEY 197


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +1

Query: 391 PNDNRVIATVRDVSRLETFSFEAVAVVPNNHTGGLDGLRGGRY 519
           P +N        V+  ETFS   V V+P   T   DG+RG  Y
Sbjct: 158 PKNNPTTVYSGTVATTETFSSSTVVVIP---TAICDGVRGLEY 197


>SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 543 GLVESGMTIS-TTTQPIKSSGVVIRNYSHSFEGERLQSTDVSD 418
           G+  SG T S T+T   + S +   +Y  SF+   LQST V D
Sbjct: 309 GVTTSGTTHSYTSTGSKRYSQMGTEDYQPSFQPNILQSTQVVD 351


>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 316

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +2

Query: 326 PAEKRTLASSPRRSYCYYHSNSQTTIGSSQPSETSVDWRRSPSKLWL*F 472
           P +KRT  S+P     + HSN+    G  Q  E  V W  SP++  L F
Sbjct: 120 PQDKRTTTSTPNVKPVFQHSNNDD--GDEQVFELKV-W--SPNQFLLNF 163


>SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 350 SSPRRSYCYYHSNSQTTIGSSQPSETSVD 436
           S+P +S  YYHS     I  SQP    VD
Sbjct: 42  SNPAKSN-YYHSTVTDDISKSQPYRLGVD 69


>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -3

Query: 565 LLGTISGRTGRIRDDNIYHHATHQVLRCGYSELQPQLRRR 446
           LL T + R  R  D +  H A  Q LR  YS+  P   RR
Sbjct: 102 LLKTFACRIERANDGD--HQAIWQTLRYAYSQTGPLRHRR 139


>SPAC4H3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = -1

Query: 594 RGHFFQSLEHSWGPSQ---VGLVESGMTISTTTQPIKSSGVVIRNYSHSFEGE 445
           R   ++ LE +   +Q   +GL + G+ +   T+ +      IRNY  S   E
Sbjct: 15  RAQLYKELEDALNANQEKKIGLEQMGIIVQLVTEGLNEVSSDIRNYQASLTKE 67


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
 Frame = -2

Query: 266 SLSKLWHSDDEDD------KMHTR*LWARLAPNTRHRMRSFANIL--TGTVQEFPQKENK 111
           SL +L H DDEDD      K     L ++ AP T    +  ++IL     +++   ++N 
Sbjct: 176 SLDQLPHLDDEDDLQLTPIKEERNYLHSQDAPTTNALSKKISDILIPASAMKDLKDRKNA 235

Query: 110 LFKYIKDFNES 78
           L    K+F ES
Sbjct: 236 L---AKEFEES 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,668,780
Number of Sequences: 5004
Number of extensions: 54890
Number of successful extensions: 155
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)