Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16f12
         (624 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1251 + 28749558-28749818,28749953-28750146,28750269-28750695     29   2.3  
06_03_1253 + 28761311-28761598,28761689-28761882,28762327-28762711     29   4.0  
02_02_0707 + 13144147-13144788,13145115-13148663                       29   4.0  
10_08_0585 - 18998013-18998306,18998448-18998630,18999048-189990...    28   5.2  
09_03_0052 + 11904633-11905616,11906324-11906491,11906588-11906977     28   6.9  
05_04_0323 + 20248868-20248988,20249503-20249603                       28   6.9  

>06_03_1251 + 28749558-28749818,28749953-28750146,28750269-28750695
          Length = 293

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 591 GHFFQSLEHSWGPSQVGLVESGMTISTTTQPIKSSG 484
           G+FFQ  E SWG  +  +V+ G  +  T      SG
Sbjct: 21  GNFFQDAEVSWGQGRGKIVDGGRGLDLTLDRSSGSG 56


>06_03_1253 + 28761311-28761598,28761689-28761882,28762327-28762711
          Length = 288

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = -1

Query: 600 GARGHFFQSLEHSWGPSQVGLVESGMTISTTTQPIKSSGVVIRN 469
           GA G+F+Q ++ +WG  +  ++ +G  ++ +      SG   +N
Sbjct: 27  GAAGNFYQDVDITWGDGRGKILGNGQLLTLSLDRSSGSGFQSKN 70


>02_02_0707 + 13144147-13144788,13145115-13148663
          Length = 1396

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
 Frame = -2

Query: 623  VSTSGQRS-VRAATSS--KVLSTLGDHLRSDWSNPG*QYLPPRNPSSPPVWLFGTTATAS 453
            V+T G+ +  R AT +   + +T GDH+RS W N     L     S  P  L G TA   
Sbjct: 809  VTTFGEDTKARMATEAVFTIATTHGDHIRSGWRNIVDCILRLHKISLLPGCLTGDTAD-D 867

Query: 452  KENVSNLLTS 423
            +E+ S++L S
Sbjct: 868  QESSSDMLPS 877


>10_08_0585 -
           18998013-18998306,18998448-18998630,18999048-18999089,
           18999226-18999495,18999903-19000454,19000546-19000770,
           19001435-19001640,19001738-19001936,19002166-19002381,
           19002887-19002991,19003127-19003243,19003366-19003548,
           19004292-19004468,19004714-19004816,19005066-19005523
          Length = 1109

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 22/80 (27%), Positives = 35/80 (43%)
 Frame = -2

Query: 329 RASLKAQSILVSTLLHVAWLPSLSKLWHSDDEDDKMHTR*LWARLAPNTRHRMRSFANIL 150
           R +  A   L    L + W+P +SKL  S   +DK       AR+  N+   +      L
Sbjct: 631 RGAALALGTLPYEFLVLKWMPVISKLCSSCTIEDKPDDPDAEARV--NSVRGLILVCETL 688

Query: 149 TGTVQEFPQKENKLFKYIKD 90
           T +V+      + ++ YIKD
Sbjct: 689 TASVEHSSSFGDSMYSYIKD 708


>09_03_0052 + 11904633-11905616,11906324-11906491,11906588-11906977
          Length = 513

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +2

Query: 206 KVIVCAFCHLHRHYARV 256
           KV+VCA CH  RHY  V
Sbjct: 76  KVVVCARCHSLRHYGVV 92


>05_04_0323 + 20248868-20248988,20249503-20249603
          Length = 73

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 320 LKAQSILVSTLLHVAWLPSLSKLWHSDDE 234
           + A +I V+T+LH+ W P   KL     E
Sbjct: 1   MAAAAIAVATILHLGWFPCTGKLRRGQPE 29


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,368,038
Number of Sequences: 37544
Number of extensions: 399901
Number of successful extensions: 1263
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1262
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)