Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16f12
         (624 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099001-6|AAC68738.2|  661|Caenorhabditis elegans Lateral signa...    29   2.7  
AC006608-11|AAF39761.1|  360|Caenorhabditis elegans Hypothetical...    29   2.7  
Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical pr...    27   8.2  
AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical...    27   8.2  

>AF099001-6|AAC68738.2|  661|Caenorhabditis elegans Lateral
           signaling target protein 2 protein.
          Length = 661

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
 Frame = +2

Query: 155 CSRSFSFYASCSALAVP------KVIVCAFCHLHR 241
           C R F    SC+ +++P      KV VC  C++HR
Sbjct: 591 CGRIFCHKCSCNTISIPEHGYDRKVRVCNLCYVHR 625


>AC006608-11|AAF39761.1|  360|Caenorhabditis elegans Hypothetical
           protein C15F1.1 protein.
          Length = 360

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -2

Query: 251 WHSDDEDDKMHTR*LWARLAPNTRH-RMRSFANILTGTVQEFPQKENKLFKYIKDFNESL 75
           W  +D+D+ +H+   +  + PNT+   + +  N    TV+E P   N++   +KD     
Sbjct: 254 WSINDKDE-LHSEYGYISVKPNTKEVALTTVMNNGFVTVEEGPVNGNQIRFRLKDIGRIS 312

Query: 74  NSRPRPTH 51
            SR  P H
Sbjct: 313 FSRDLPVH 320


>Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical
           protein Y37A1B.1a protein.
          Length = 1222

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -1

Query: 603 VGARGHFFQSLEHSWGPSQVGLVESGMT--ISTTTQPIKS-SGVVIRNYSHSF 454
           VGARG     +  SW PSQ G   +  T  I T  +  KS +G+ + + S  F
Sbjct: 449 VGARGKETMGIGGSWSPSQDGADPNSATTMIRTAVRTTKSLTGIDLSSVSQWF 501


>AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical
           protein Y37A1B.1a protein.
          Length = 1222

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -1

Query: 603 VGARGHFFQSLEHSWGPSQVGLVESGMT--ISTTTQPIKS-SGVVIRNYSHSF 454
           VGARG     +  SW PSQ G   +  T  I T  +  KS +G+ + + S  F
Sbjct: 449 VGARGKETMGIGGSWSPSQDGADPNSATTMIRTAVRTTKSLTGIDLSSVSQWF 501


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,098,253
Number of Sequences: 27780
Number of extensions: 323742
Number of successful extensions: 934
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)