Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16f12
         (624 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.45 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   4.2  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   5.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   5.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   5.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 576 SLEHSWGPSQVGLVESGMTISTTTQPIK 493
           +L+ + G S +G + + M  STTT P K
Sbjct: 616 NLQAALGDSNMGFLNNSMCTSTTTSPDK 643


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 329 AEKRTLASSPRRSYCYYHSNSQTTIGSSQ 415
           AEKR  +    +   YY ++  T IG+SQ
Sbjct: 774 AEKREKSEHCEKGKEYYAASFHTDIGNSQ 802


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 370 VAPPR*RSQCPLLRGPVSKRSQ 305
           V PPR ++ CPL   P   +SQ
Sbjct: 338 VEPPRRKNNCPLHCKPELGQSQ 359


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 537 VESGMTISTTTQPIKSSGV 481
           + SG++IS +T+P  S G+
Sbjct: 542 LSSGLSISDSTKPETSKGI 560


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 329 AEKRTLASSPRRSYCYY 379
           AEK  L   PR +YC +
Sbjct: 560 AEKTGLGKGPRTTYCAF 576


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,845
Number of Sequences: 438
Number of extensions: 3850
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)