Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16f09
         (634 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1540 - 27570605-27571375,27571474-27572748,27572769-275729...    30   1.8  
11_06_0264 - 21785450-21786928                                         29   3.1  
02_02_0419 - 10009686-10012568                                         29   4.1  
06_01_0900 + 6926600-6927202                                           24   5.2  
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177...    28   7.1  
11_01_0185 + 1455635-1455817,1455997-1456051,1456415-1456611,145...    27   9.4  

>07_03_1540 -
           27570605-27571375,27571474-27572748,27572769-27572921,
           27572923-27573159
          Length = 811

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +1

Query: 208 KLLINDQELGTATLYITENNVIWGGGVSPSGNPAPTINLLYPSISLHAIQREPSPAL 378
           KL++ D ELG+  L + E + +  G   P G+P   + +L    S+HA+  +  P +
Sbjct: 405 KLIVADNELGSLKLAL-EGSYVEPG---PGGDPIHNLKVLPTGKSIHALDPQTMPTI 457


>11_06_0264 - 21785450-21786928
          Length = 492

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 277 GGGVSPSGNPAPTINLLYPSISLHAIQREPSPALYMVL 390
           GGG + S +P+P    +  S S H     P P  Y+ +
Sbjct: 299 GGGAASSSSPSPVARTVLSSPSPHQYSSGPKPTQYLAV 336


>02_02_0419 - 10009686-10012568
          Length = 960

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = +1

Query: 241 ATLYITENNVIWGGGVSPSGNP---APTINLLYPSISLHAIQREPSPALYMVLNYELRLP 411
           A L +++NN+I G GVSPS  P       +L Y ++S   +  E  P L  +    LR  
Sbjct: 116 AYLDLSQNNLIGGDGVSPSPLPRFLGSLCDLRYLNLSFTGLAGEIPPQLGNLT--RLRQL 173

Query: 412 ELSQQAG 432
           +LS   G
Sbjct: 174 DLSSNVG 180


>06_01_0900 + 6926600-6927202
          Length = 200

 Score = 23.8 bits (49), Expect(2) = 5.2
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 607 PCMGHHPRPHQPDP 566
           P + HHP P QP P
Sbjct: 175 PPLFHHPPPQQPHP 188



 Score = 23.0 bits (47), Expect(2) = 5.2
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -1

Query: 592 HPRPHQPDPDA 560
           HP PH P P A
Sbjct: 187 HPHPHPPSPSA 197


>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
            1778770-1778900,1779530-1779788,1779823-1780098,
            1780100-1781352
          Length = 1344

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 21   WKALFLFFLITNKPRDWKSFIKN*LNAFLVFILLN 125
            W +LF    +   P +W S+IK  L++    +LLN
Sbjct: 1067 WSSLFKILAVRGFPENWISWIKGLLSSSKSAVLLN 1101


>11_01_0185 +
           1455635-1455817,1455997-1456051,1456415-1456611,
           1456850-1457206,1457355-1457424,1457527-1457672,
           1457786-1457831,1457910-1457962,1458507-1458651,
           1459268-1459386,1459494-1459565,1459872-1459975,
           1460117-1460173,1460260-1460452,1460535-1460678,
           1460825-1460927,1461444-1461592,1462674-1462728,
           1464037-1464227,1464580-1464701,1464831-1464978,
           1465354-1465423,1465499-1465644,1466097-1466247,
           1466614-1466732,1466807-1466848,1466849-1466961,
           1467496-1467552,1467642-1467834,1468040-1468183,
           1468567-1468665
          Length = 1280

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = +1

Query: 175 ADGVLLQSPSTKLLINDQELGTATLYITENNVIWGGGVSPSGNPAPTINLLYPSISLHAI 354
           +D V L   +T L      LG+    +T +NV+     S     +   + L  ++S H+I
Sbjct: 605 SDPVSLTISATGLQARVNALGSTATVLTSSNVMDENSFSNPNKQSRCKSRLLLTLSPHSI 664

Query: 355 QREPSP 372
            R PSP
Sbjct: 665 LRLPSP 670


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,598,060
Number of Sequences: 37544
Number of extensions: 334239
Number of successful extensions: 783
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)