Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt16f09
(634 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68270-12|CAA92573.1| 205|Caenorhabditis elegans Hypothetical p... 57 1e-08
Z68213-6|CAA92442.1| 205|Caenorhabditis elegans Hypothetical pr... 57 1e-08
AF202931-1|AAK69381.1| 205|Caenorhabditis elegans ICln1 protein. 57 1e-08
Z68270-13|CAD21675.1| 225|Caenorhabditis elegans Hypothetical p... 48 7e-06
Z68213-7|CAD21589.1| 225|Caenorhabditis elegans Hypothetical pr... 48 7e-06
AF202932-1|AAK69382.1| 225|Caenorhabditis elegans ICln2 protein. 48 7e-06
Z66515-3|CAA91352.1| 322|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z66515-2|CAA91353.1| 543|Caenorhabditis elegans Hypothetical pr... 30 1.6
S66936-1|AAB28820.1| 360|Caenorhabditis elegans Egl-43 protein. 30 1.6
S66757-1|AAB28819.1| 581|Caenorhabditis elegans Egl-43 protein. 30 1.6
Z49125-7|CAN99660.1| 717|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z49125-6|CAA88937.2| 776|Caenorhabditis elegans Hypothetical pr... 27 8.4
>Z68270-12|CAA92573.1| 205|Caenorhabditis elegans Hypothetical
protein C01F6.8a protein.
Length = 205
Score = 56.8 bits (131), Expect = 1e-08
Identities = 35/139 (25%), Positives = 69/139 (49%), Gaps = 2/139 (1%)
Frame = +1
Query: 148 VVSSNFAEPADGVLLQSPSTKLLINDQELGTATLYITENNVIWGGGVSPSGNPAPTINLL 327
++ + ++P +G+ L + + + LG TLYIT++ VIW S +G ++
Sbjct: 1 MILTEVSQPTEGIKLATTNVQAFFKIDSLGNGTLYITDSAVIWIS--SAAGTKG--FSVA 56
Query: 328 YPSISLHAIQREPS--PALYMVLNYELRLPELSQQAGSTXXXXXXXXXXXXQPITQLRFI 501
YP+I LHAI + S P+ ++ + + R L + + +P ++RF+
Sbjct: 57 YPAIVLHAISTDVSVFPSEHIFVMVDQRKSGL--ELAAAELEDEESDDDEEEPALEIRFV 114
Query: 502 PENENELQAMYSAMCQGQE 558
P++++ L +Y + GQE
Sbjct: 115 PDDKDSLSQIYHQIAVGQE 133
>Z68213-6|CAA92442.1| 205|Caenorhabditis elegans Hypothetical
protein C01F6.8a protein.
Length = 205
Score = 56.8 bits (131), Expect = 1e-08
Identities = 35/139 (25%), Positives = 69/139 (49%), Gaps = 2/139 (1%)
Frame = +1
Query: 148 VVSSNFAEPADGVLLQSPSTKLLINDQELGTATLYITENNVIWGGGVSPSGNPAPTINLL 327
++ + ++P +G+ L + + + LG TLYIT++ VIW S +G ++
Sbjct: 1 MILTEVSQPTEGIKLATTNVQAFFKIDSLGNGTLYITDSAVIWIS--SAAGTKG--FSVA 56
Query: 328 YPSISLHAIQREPS--PALYMVLNYELRLPELSQQAGSTXXXXXXXXXXXXQPITQLRFI 501
YP+I LHAI + S P+ ++ + + R L + + +P ++RF+
Sbjct: 57 YPAIVLHAISTDVSVFPSEHIFVMVDQRKSGL--ELAAAELEDEESDDDEEEPALEIRFV 114
Query: 502 PENENELQAMYSAMCQGQE 558
P++++ L +Y + GQE
Sbjct: 115 PDDKDSLSQIYHQIAVGQE 133
>AF202931-1|AAK69381.1| 205|Caenorhabditis elegans ICln1 protein.
Length = 205
Score = 56.8 bits (131), Expect = 1e-08
Identities = 35/139 (25%), Positives = 69/139 (49%), Gaps = 2/139 (1%)
Frame = +1
Query: 148 VVSSNFAEPADGVLLQSPSTKLLINDQELGTATLYITENNVIWGGGVSPSGNPAPTINLL 327
++ + ++P +G+ L + + + LG TLYIT++ VIW S +G ++
Sbjct: 1 MILTEVSQPTEGIKLATTNVQAFFKIDSLGNGTLYITDSAVIWIS--SAAGTKG--FSVA 56
Query: 328 YPSISLHAIQREPS--PALYMVLNYELRLPELSQQAGSTXXXXXXXXXXXXQPITQLRFI 501
YP+I LHAI + S P+ ++ + + R L + + +P ++RF+
Sbjct: 57 YPAIVLHAISTDVSVFPSEHIFVMVDQRKSGL--ELAAAELEDEESDDDEEEPALEIRFV 114
Query: 502 PENENELQAMYSAMCQGQE 558
P++++ L +Y + GQE
Sbjct: 115 PDDKDSLSQIYHQIAVGQE 133
>Z68270-13|CAD21675.1| 225|Caenorhabditis elegans Hypothetical
protein C01F6.8b protein.
Length = 225
Score = 47.6 bits (108), Expect = 7e-06
Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 20/157 (12%)
Frame = +1
Query: 148 VVSSNFAEPADGVLLQSPSTKLLINDQELGTATLYITENNVIWGGGVSPSGNPAPTINLL 327
++ + ++P +G+ L + + + LG TLYIT++ VIW S +G ++
Sbjct: 1 MILTEVSQPTEGIKLATTNVQAFFKIDSLGNGTLYITDSAVIWIS--SAAGTKG--FSVA 56
Query: 328 YPSISLHAIQRE----PSPALYMVLNYE-----------LR-LPELSQQAG----STXXX 447
YP+I LHAI + PS ++++++ LR + E +Q G +
Sbjct: 57 YPAIVLHAISTDVSVFPSEHIFVMVDQRKSVRRRRRAPVLRTIQEDDEQRGLELAAAELE 116
Query: 448 XXXXXXXXXQPITQLRFIPENENELQAMYSAMCQGQE 558
+P ++RF+P++++ L +Y + GQE
Sbjct: 117 DEESDDDEEEPALEIRFVPDDKDSLSQIYHQIAVGQE 153
>Z68213-7|CAD21589.1| 225|Caenorhabditis elegans Hypothetical
protein C01F6.8b protein.
Length = 225
Score = 47.6 bits (108), Expect = 7e-06
Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 20/157 (12%)
Frame = +1
Query: 148 VVSSNFAEPADGVLLQSPSTKLLINDQELGTATLYITENNVIWGGGVSPSGNPAPTINLL 327
++ + ++P +G+ L + + + LG TLYIT++ VIW S +G ++
Sbjct: 1 MILTEVSQPTEGIKLATTNVQAFFKIDSLGNGTLYITDSAVIWIS--SAAGTKG--FSVA 56
Query: 328 YPSISLHAIQRE----PSPALYMVLNYE-----------LR-LPELSQQAG----STXXX 447
YP+I LHAI + PS ++++++ LR + E +Q G +
Sbjct: 57 YPAIVLHAISTDVSVFPSEHIFVMVDQRKSVRRRRRAPVLRTIQEDDEQRGLELAAAELE 116
Query: 448 XXXXXXXXXQPITQLRFIPENENELQAMYSAMCQGQE 558
+P ++RF+P++++ L +Y + GQE
Sbjct: 117 DEESDDDEEEPALEIRFVPDDKDSLSQIYHQIAVGQE 153
>AF202932-1|AAK69382.1| 225|Caenorhabditis elegans ICln2 protein.
Length = 225
Score = 47.6 bits (108), Expect = 7e-06
Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 20/157 (12%)
Frame = +1
Query: 148 VVSSNFAEPADGVLLQSPSTKLLINDQELGTATLYITENNVIWGGGVSPSGNPAPTINLL 327
++ + ++P +G+ L + + + LG TLYIT++ VIW S +G ++
Sbjct: 1 MILTEVSQPTEGIKLATTNVQAFFKIDSLGNGTLYITDSAVIWIS--SAAGTKG--FSVA 56
Query: 328 YPSISLHAIQRE----PSPALYMVLNYE-----------LR-LPELSQQAG----STXXX 447
YP+I LHAI + PS ++++++ LR + E +Q G +
Sbjct: 57 YPAIVLHAISTDVSVFPSEHIFVMVDQRKSVRRRRRAPVLRTIQEDDEQRGLELAAAELE 116
Query: 448 XXXXXXXXXQPITQLRFIPENENELQAMYSAMCQGQE 558
+P ++RF+P++++ L +Y + GQE
Sbjct: 117 DEESDDDEEEPALEIRFVPDDKDSLSQIYHQIAVGQE 153
>Z66515-3|CAA91352.1| 322|Caenorhabditis elegans Hypothetical
protein R53.3b protein.
Length = 322
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -3
Query: 260 SVMYNVAVPNS*SFMRSFVDGDCSNTPSAGSAKLLDTTTIVVLQYI 123
S+ YN AVP+ SF+R+ S++PS+ S D T Q +
Sbjct: 186 SLNYNPAVPSPHSFLRAMSGAKASSSPSSSSGSGKDRYTCKFCQKV 231
>Z66515-2|CAA91353.1| 543|Caenorhabditis elegans Hypothetical
protein R53.3a protein.
Length = 543
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -3
Query: 260 SVMYNVAVPNS*SFMRSFVDGDCSNTPSAGSAKLLDTTTIVVLQYI 123
S+ YN AVP+ SF+R+ S++PS+ S D T Q +
Sbjct: 407 SLNYNPAVPSPHSFLRAMSGAKASSSPSSSSGSGKDRYTCKFCQKV 452
>S66936-1|AAB28820.1| 360|Caenorhabditis elegans Egl-43 protein.
Length = 360
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -3
Query: 260 SVMYNVAVPNS*SFMRSFVDGDCSNTPSAGSAKLLDTTTIVVLQYI 123
S+ YN AVP+ SF+R+ S++PS+ S D T Q +
Sbjct: 186 SLNYNPAVPSPHSFLRAMSGAKASSSPSSSSGSGKDRYTCKFCQKV 231
>S66757-1|AAB28819.1| 581|Caenorhabditis elegans Egl-43 protein.
Length = 581
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -3
Query: 260 SVMYNVAVPNS*SFMRSFVDGDCSNTPSAGSAKLLDTTTIVVLQYI 123
S+ YN AVP+ SF+R+ S++PS+ S D T Q +
Sbjct: 407 SLNYNPAVPSPHSFLRAMSGAKASSSPSSSSGSGKDRYTCKFCQKV 452
>Z49125-7|CAN99660.1| 717|Caenorhabditis elegans Hypothetical
protein C47G2.5b protein.
Length = 717
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Frame = -1
Query: 616 LSRPCMGHHPRPH--QPDPDAIL 554
L RPCM + P H QPDP+ I+
Sbjct: 312 LMRPCMDNDPYEHSYQPDPERIV 334
>Z49125-6|CAA88937.2| 776|Caenorhabditis elegans Hypothetical
protein C47G2.5a protein.
Length = 776
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Frame = -1
Query: 616 LSRPCMGHHPRPH--QPDPDAIL 554
L RPCM + P H QPDP+ I+
Sbjct: 312 LMRPCMDNDPYEHSYQPDPERIV 334
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,090,387
Number of Sequences: 27780
Number of extensions: 285072
Number of successful extensions: 676
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -