Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16f09
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    25   0.61 
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    24   1.1  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    24   1.1  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   5.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   5.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   5.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   5.7  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 260 SVMYNVAVPNS*SFMRSFVDGDCSNTPSAGSAKLLDTTTIVVLQY 126
           +V +NV   +     R +V GD  N P  G+A    T  ++VL +
Sbjct: 307 NVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADF--TAQVIVLNH 349


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 260 SVMYNVAVPNS*SFMRSFVDGDCSNTPSAGSAKLLDTTTIVVLQY 126
           +V +NV   +     R +V GD  N P  G+A    T  ++VL +
Sbjct: 307 NVGFNVKNISVKELRRGYVAGDSKNQPPRGAADF--TAQVIVLNH 349


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 260 SVMYNVAVPNS*SFMRSFVDGDCSNTPSAGSAKLLDTTTIVVLQY 126
           +V +NV   +     R +V GD  N P  G+A    T  ++VL +
Sbjct: 18  NVGFNVKNISVKELRRGYVAGDSKNQPPRGAADF--TAQVIVLNH 60


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 314 PSIYSIQAYLYMRYNANHPLPCTW 385
           PS+ S+ AYL        P+  +W
Sbjct: 229 PSLTSLNAYLIKNQTITCPIKVSW 252


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 314 PSIYSIQAYLYMRYNANHPLPCTW 385
           PS+ S+ AYL        P+  +W
Sbjct: 229 PSLTSLNAYLIKNQTITCPIKVSW 252


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 314 PSIYSIQAYLYMRYNANHPLPCTW 385
           PS+ S+ AYL        P+  +W
Sbjct: 280 PSLTSLNAYLIKNQTITCPIKVSW 303


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 314 PSIYSIQAYLYMRYNANHPLPCTW 385
           PS+ S+ AYL        P+  +W
Sbjct: 229 PSLTSLNAYLIKNQTITCPIKVSW 252


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,331
Number of Sequences: 438
Number of extensions: 3731
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)