Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16f03
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   7.1  
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    25   9.4  
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    25   9.4  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   9.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 646 GFIFLSTLIQTILNYAR*QLKYDTFLLKTLVTALGI 539
           GF  L T+ +T+L+ +    +  TFLLK L    G+
Sbjct: 247 GFNALGTIAETVLSKSLNSARMATFLLKFLCNKKGL 282


>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
 Frame = -2

Query: 623 NTNNFKLCSLTVKI*Y-----IFTKNISNCSRNFTSLVYFLSLYK 504
           NTN++K+C ++ K  Y     + T++ S    +   LV +L+LY+
Sbjct: 438 NTNSWKMCGISPKSTYAIYFEVATQSASAPQGDSRGLVQYLTLYQ 482


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 8/20 (40%), Positives = 17/20 (85%), Gaps = 1/20 (5%)
 Frame = +1

Query: 31  KKINFFY-IIHFVPNYSYRS 87
           ++IN++  ++H++PNYS R+
Sbjct: 57  RRINYYIPVLHWLPNYSLRN 76


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 529 KEVKFLEQLLMFLVKMYHILTVNEHNLKLFVL 624
           K V+   Q L+F+V  +    VNE  LKLFV+
Sbjct: 329 KSVESSVQALLFMVLPHLHTLVNELTLKLFVV 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,569,654
Number of Sequences: 5004
Number of extensions: 53411
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)