Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16f03
         (648 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC034344-1|AAH34344.1|  270|Homo sapiens elongation of very long...    30   6.2  
AL160011-1|CAH71623.1|  270|Homo sapiens elongation of very long...    30   6.2  
AK222656-1|BAD96376.1|  615|Homo sapiens hypothetical protein FL...    30   6.2  
AK001940-1|BAA91990.1|  615|Homo sapiens protein ( Homo sapiens ...    30   6.2  
AF292387-1|AAG17875.1|  236|Homo sapiens CIG30 protein.                30   6.2  

>BC034344-1|AAH34344.1|  270|Homo sapiens elongation of very long
           chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3
           protein.
          Length = 270

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 313 WNTVSPTLRTGKIFSTCCFINFIQN 387
           W  +   L TG +  T CFINFI N
Sbjct: 86  WGIMGTVLLTGGLKQTVCFINFIDN 110


>AL160011-1|CAH71623.1|  270|Homo sapiens elongation of very long
           chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3
           protein.
          Length = 270

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 313 WNTVSPTLRTGKIFSTCCFINFIQN 387
           W  +   L TG +  T CFINFI N
Sbjct: 86  WGIMGTVLLTGGLKQTVCFINFIDN 110


>AK222656-1|BAD96376.1|  615|Homo sapiens hypothetical protein
           FLJ11078 variant protein.
          Length = 615

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 289 FYIPLTTSWNTVSPTLRTGKIFSTCCFI 372
           +Y+P T  W +VSP +R G+  + CC +
Sbjct: 531 YYVPETDQWTSVSP-MRAGQSEAGCCLL 557


>AK001940-1|BAA91990.1|  615|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11078 fis, clone PLACE1005102, weakly similar to
           RING CANAL PROTEIN. ).
          Length = 615

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 289 FYIPLTTSWNTVSPTLRTGKIFSTCCFI 372
           +Y+P T  W +VSP +R G+  + CC +
Sbjct: 531 YYVPETDQWTSVSP-MRAGQSEAGCCLL 557


>AF292387-1|AAG17875.1|  236|Homo sapiens CIG30 protein.
          Length = 236

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 313 WNTVSPTLRTGKIFSTCCFINFIQN 387
           W  +   L TG +  T CFINFI N
Sbjct: 52  WGIMGTVLLTGGLKQTVCFINFIDN 76


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,144,633
Number of Sequences: 237096
Number of extensions: 1571792
Number of successful extensions: 2256
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2256
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7197658880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)