Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16f03
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81583-6|CAB04674.1|  397|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z81479-11|CAB03937.2| 1441|Caenorhabditis elegans Hypothetical p...    28   6.6  
Z73423-8|CAO82012.1| 1441|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U41996-1|AAA83471.2|  306|Caenorhabditis elegans Serpentine rece...    28   6.6  
AL110478-10|CAE17956.3|  758|Caenorhabditis elegans Hypothetical...    28   6.6  
AL110478-12|CAM33509.1|  108|Caenorhabditis elegans Hypothetical...    27   8.7  
AL110478-9|CAB54343.2|  113|Caenorhabditis elegans Hypothetical ...    27   8.7  

>Z81583-6|CAB04674.1|  397|Caenorhabditis elegans Hypothetical
           protein T02G6.6 protein.
          Length = 397

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 27/98 (27%), Positives = 42/98 (42%)
 Frame = +1

Query: 256 QVSKYIDLNSFFYIPLTTSWNTVSPTLRTGKIFSTCCFINFIQNINEMLLNQYK*QG*Q* 435
           + SK  DL+ FF    TT ++ V  +   G+ F    F+      + + L+QYK      
Sbjct: 199 ECSKNFDLSHFFVWNFTTHFSFVEFSPTNGEDFHKLTFLQNRVTTDILQLSQYKIDNVYH 258

Query: 436 KSSIPRSAYKSSCTVAVWSTNYVLYSDKKYTKEVKFLE 549
           +  I       SC V +   N+   S+  +  EVK LE
Sbjct: 259 RKQIQLPVLTQSC-VKISLMNFGEISN-LFKMEVKRLE 294


>Z81479-11|CAB03937.2| 1441|Caenorhabditis elegans Hypothetical
           protein C34F6.10 protein.
          Length = 1441

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 241 PEH*RHYLENNHHIDYQKLPSVPFQVYFI 155
           P   R Y +++  ++Y + PS PF V F+
Sbjct: 773 PSRFRQYSDDHRKVNYDRSPSTPFFVRFV 801


>Z73423-8|CAO82012.1| 1441|Caenorhabditis elegans Hypothetical
           protein C34F6.10 protein.
          Length = 1441

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 241 PEH*RHYLENNHHIDYQKLPSVPFQVYFI 155
           P   R Y +++  ++Y + PS PF V F+
Sbjct: 773 PSRFRQYSDDHRKVNYDRSPSTPFFVRFV 801


>U41996-1|AAA83471.2|  306|Caenorhabditis elegans Serpentine
           receptor, class sx protein22 protein.
          Length = 306

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/47 (19%), Positives = 26/47 (55%)
 Frame = +1

Query: 259 VSKYIDLNSFFYIPLTTSWNTVSPTLRTGKIFSTCCFINFIQNINEM 399
           +  +I L+  + +     ++T+ P  + G +FS CC ++ + ++ ++
Sbjct: 96  IGLFIGLDRLYSVSFPVKYSTI-PVYQYGIVFSCCCILSLVVSLAKL 141


>AL110478-10|CAE17956.3|  758|Caenorhabditis elegans Hypothetical
           protein Y26D4A.13 protein.
          Length = 758

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 235 VLDESGEQVSKYIDLNSFFYIPLTTSWNTVSPTLRTGKI 351
           +L +    ++KYID+N +  I + T  NTV+PT+    I
Sbjct: 420 ILSKYNIDINKYIDINKYNDI-IITHENTVNPTVEFNTI 457


>AL110478-12|CAM33509.1|  108|Caenorhabditis elegans Hypothetical
          protein Y26D4A.17 protein.
          Length = 108

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 1  GCFVKYVRYCKKINFFYIIHF 63
          GCF K  +   KIN FYI++F
Sbjct: 37 GCFEKVKKIFDKINQFYILYF 57


>AL110478-9|CAB54343.2|  113|Caenorhabditis elegans Hypothetical
           protein Y26D4A.5 protein.
          Length = 113

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 1   GCFVKYVRYCKKINFFYIIHF 63
           GCF K  +   KIN FYI++F
Sbjct: 42  GCFEKVKKIFDKINQFYILYF 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,992,535
Number of Sequences: 27780
Number of extensions: 291443
Number of successful extensions: 676
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)