Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt16f01
(531 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 152 4e-38
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 147 8e-37
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 145 3e-36
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 130 1e-31
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 114 7e-27
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 64 1e-11
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 59 5e-10
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ... 25 5.3
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 25 5.3
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom... 25 5.3
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 7.0
SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces pom... 25 7.0
SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyce... 25 9.3
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 25 9.3
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.3
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 152 bits (368), Expect = 4e-38
Identities = 70/93 (75%), Positives = 82/93 (88%)
Frame = +1
Query: 247 GTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTN 426
GTVIGIDLGTTYSCV V KNGRVEIIANDQGNRITPSYVAFT+D ERL+G+AAKNQ +N
Sbjct: 35 GTVIGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTED-ERLVGEAAKNQAPSN 93
Query: 427 PENTVFDAKRLIGREWSDQTVQHDVKFFPFKVV 525
PENT+FD KRLIGR++ ++T+ D+K FPF +V
Sbjct: 94 PENTIFDIKRLIGRKFDEKTMAKDIKSFPFHIV 126
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 147 bits (357), Expect = 8e-37
Identities = 70/92 (76%), Positives = 78/92 (84%)
Frame = +1
Query: 256 IGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTNPEN 435
IGIDLGTTYSCVG + N RVEIIANDQGNR TPSYVAFT D ERLIGDAAKNQ+ NP N
Sbjct: 5 IGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPHN 63
Query: 436 TVFDAKRLIGREWSDQTVQHDVKFFPFKVVEK 531
T+FDAKRLIGR ++D VQ D+K +PFKV+EK
Sbjct: 64 TIFDAKRLIGRRFNDPEVQSDMKHWPFKVIEK 95
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 145 bits (352), Expect = 3e-36
Identities = 69/92 (75%), Positives = 77/92 (83%)
Frame = +1
Query: 256 IGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTNPEN 435
IGIDLGTTYSCVG + N RVEIIANDQGNR TPSYVAFT D ERLIGDAAKNQ+ NP N
Sbjct: 5 IGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPHN 63
Query: 436 TVFDAKRLIGREWSDQTVQHDVKFFPFKVVEK 531
T+FDAKRLIGR++ D VQ D+K +PFKV+ K
Sbjct: 64 TIFDAKRLIGRKFDDPEVQSDMKHWPFKVISK 95
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 130 bits (315), Expect = 1e-31
Identities = 61/91 (67%), Positives = 71/91 (78%)
Frame = +1
Query: 256 IGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTNPEN 435
IGIDLGTTYSCV V++ VEII NDQG R TPS+VAFT+ ERL+GDAAKNQ NP N
Sbjct: 9 IGIDLGTTYSCVAVWETANVEIIPNDQGARTTPSFVAFTET-ERLVGDAAKNQAAMNPRN 67
Query: 436 TVFDAKRLIGREWSDQTVQHDVKFFPFKVVE 528
TVFDAKRLIGR + D Q D+K +PFKV++
Sbjct: 68 TVFDAKRLIGRRYEDPETQKDIKHWPFKVID 98
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 114 bits (275), Expect = 7e-27
Identities = 53/94 (56%), Positives = 67/94 (71%)
Frame = +1
Query: 247 GTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTN 426
G VIGIDLGTT SC+ + + ++IAN +G R TPS VAFT+DGERL+G +AK Q N
Sbjct: 50 GPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVIN 109
Query: 427 PENTVFDAKRLIGREWSDQTVQHDVKFFPFKVVE 528
PENT F KRLIGR + + VQ D+K P+K+VE
Sbjct: 110 PENTFFATKRLIGRRFKEPEVQRDIKEVPYKIVE 143
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 64.1 bits (149), Expect = 1e-11
Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Frame = +1
Query: 253 VIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTNPE 432
V+GID G + + + V +N +++I N+ NR TPS V++ + R +G+AAK+ +N
Sbjct: 7 VVGIDFGNSKTVIAVARNRAIDVIVNEVSNRSTPSLVSY-GERSRFLGEAAKSAEASNFR 65
Query: 433 NTVFDAKRLIGREWSDQTVQH-DVKFFPFKVVE 528
NTV KRL GR + D ++ + F K+ E
Sbjct: 66 NTVGSLKRLAGRTYDDPEIKDIESNFISAKLTE 98
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 58.8 bits (136), Expect = 5e-10
Identities = 28/82 (34%), Positives = 49/82 (59%)
Frame = +1
Query: 250 TVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTNP 429
TVIGI G S + ++G+ +++AN++GNR PS +++ D E G A+ QL N
Sbjct: 25 TVIGISFGNQNSSIAFNRDGKTDVLANEEGNRQIPSILSYHGDQE-YHGVQARGQLVRNA 83
Query: 430 ENTVFDAKRLIGREWSDQTVQH 495
+N+V + + L+G+ + T+ H
Sbjct: 84 DNSVTNFRDLLGKSHDELTLHH 105
>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 622
Score = 25.4 bits (53), Expect = 5.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 379 GERLIGDAAKNQLTTNPENT 438
GE ++ D+ N TNP+NT
Sbjct: 6 GENIVSDSIVNMELTNPDNT 25
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.4 bits (53), Expect = 5.3
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -2
Query: 371 VKATYEGVMRFPWS 330
+K TYEG +R PWS
Sbjct: 284 MKLTYEGELRAPWS 297
>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 564
Score = 25.4 bits (53), Expect = 5.3
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -2
Query: 518 LKGKNLTSCCTVWSLHSRPIRRLASKTVFS 429
LK N+TS +WS S + ++ASK++ S
Sbjct: 438 LKECNVTSITFIWSCRSLSLLKVASKSLNS 467
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.0 bits (52), Expect = 7.0
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = -3
Query: 154 KIYRLKDSEINKNLNKIIFTATIRSL*NAFIKHLRI 47
KI+ +DS++ KN+ + + T + S A ++ +I
Sbjct: 545 KIFNPEDSDLEKNITEALLTGDVLSAVKACLEEKKI 580
>SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 336
Score = 25.0 bits (52), Expect = 7.0
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = +1
Query: 313 VEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTNPENTVFDAKRLI 462
+E AND ITP A G+ +N+L E +F + L+
Sbjct: 80 LEKYANDMATTITPLIAAVQVFNAEKYGEIIQNRLKMYAERVLFGIEALL 129
>SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 24.6 bits (51), Expect = 9.3
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = -3
Query: 481 GHSIHDQSDAWHQRQCFQGW**AGFWQHHQLN--VHHLE*RPRMKV*CGFPGHW 326
G S D+ DA+++ QGW ++ QLN + E R+ C PG W
Sbjct: 2 GRSSKDKRDAYYRLAKEQGWRARSAFKLLQLNEQFNLFEGAKRVVDLCAAPGSW 55
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 24.6 bits (51), Expect = 9.3
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 263 SIWVPLTHVSVSTKMDV*KSLPMTRETASHL 355
S W+P H VST+ V + P ++ T L
Sbjct: 288 SSWIPTLHDLVSTRCSVWLTSPSSQRTTKDL 318
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1379
Score = 24.6 bits (51), Expect = 9.3
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -2
Query: 530 FSTTLKGKNLTSCCTVWSLHSRPIRRLASKTV 435
F T K L S C LH +P R+ S T+
Sbjct: 752 FDITSKAARLASTCAKTDLHRKPRRKHKSFTL 783
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,211,063
Number of Sequences: 5004
Number of extensions: 43918
Number of successful extensions: 118
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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