Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16e22
         (187 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0020 - 11698429-11699126,11699557-11700532                       27   1.6  
06_01_0664 + 4850445-4850879,4853155-4854186                           25   8.5  
02_05_1147 - 34447519-34448042,34448126-34449092,34449458-344496...    25   8.5  

>01_03_0020 - 11698429-11699126,11699557-11700532
          Length = 557

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 139 CR*VLP*EVAKSTYNYGHYEIVLNLTNLN 53
           CR VLP     + Y YG + +  +L N N
Sbjct: 50  CRSVLPSNGTSNLYTYGRFSVAKSLANAN 78


>06_01_0664 + 4850445-4850879,4853155-4854186
          Length = 488

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 150 CRYNVDKCCPKKLLKVLTIMGIMK 79
           CRY V K CPK  L+   I G ++
Sbjct: 120 CRYAVHKVCPKGPLRNEVINGAVR 143


>02_05_1147 -
           34447519-34448042,34448126-34449092,34449458-34449657,
           34449867-34450051,34450130-34450228,34450316-34450357,
           34450516-34450860,34450956-34451101,34451213-34451296,
           34451424-34451502,34451596-34451675,34451824-34451875,
           34451992-34452026
          Length = 945

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = -1

Query: 118 EVAKSTYNYGHYEIVLNL 65
           E+A++T NY  Y++V+N+
Sbjct: 48  EIAQATQNYHEYQMVMNV 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,314,743
Number of Sequences: 37544
Number of extensions: 35855
Number of successful extensions: 53
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 14,793,348
effective HSP length: 41
effective length of database: 13,254,044
effective search space used: 265080880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)