Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16e22
         (187 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067216-11|AAL02458.1|  707|Caenorhabditis elegans Hypothetical...    29   0.44 
Z71261-1|CAA95801.2|  437|Caenorhabditis elegans Hypothetical pr...    27   1.3  

>AF067216-11|AAL02458.1|  707|Caenorhabditis elegans Hypothetical
           protein C35E7.2a protein.
          Length = 707

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 109 KSTYNYGHYEIVLNLTNLNFTKIKCKSCYT*KNL 8
           K+T +   +++VLN   L+F  IKC  C   KNL
Sbjct: 189 KTTKSESVHQVVLNKLTLHFEIIKCSVCTYDKNL 222


>Z71261-1|CAA95801.2|  437|Caenorhabditis elegans Hypothetical
           protein F21C3.1 protein.
          Length = 437

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -2

Query: 168 HIY*DSCRYNVDKCCPKKLLK 106
           H++ D  ++  DKCCPKK++K
Sbjct: 43  HVWRD--QFQQDKCCPKKMVK 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,273,294
Number of Sequences: 27780
Number of extensions: 40790
Number of successful extensions: 91
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 12,740,198
effective HSP length: 42
effective length of database: 11,573,438
effective search space used: 219895322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)