Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16e21
         (348 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        26   1.9  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     25   2.5  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   3.4  
SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyce...    25   4.4  
SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual          24   5.9  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    24   5.9  
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch...    24   7.8  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    24   7.8  

>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +3

Query: 57  WHW-GSVDSISGSRARFQLSGNSGRKHSRCCTSILRK 164
           W W GSVD  SG         N  R  S   TS+LR+
Sbjct: 39  WKWYGSVDEDSGYVYLTSKDSNEARSGSLWSTSVLRQ 75


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = -3

Query: 142 QRLCFLPLFPLS*NRAREPLMESTDPQCHILQHRRPRLPLMQLEAP 5
           +++ FL L PLS    ++  +  ++P+   +QH++  L  ++L  P
Sbjct: 135 RKMQFLSLEPLSLLLLKDSFINKSNPEYESMQHQQILLKKLKLHFP 180


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 240 TSPVLDIAPGSDLFCFIWN*NA 305
           T P+  + P  ++FC IW+ NA
Sbjct: 411 THPLRSVIPLDNIFCNIWSDNA 432


>SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 340 LHRIDKFIKNLNAF*FQIKQKRSDPGAMSRTG 245
           LH+I KF  +L +    + +++    AMSR G
Sbjct: 119 LHQIKKFSSDLQSLKSSMGERQKQQAAMSRRG 150


>SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = -3

Query: 235 HHLMAWGLPWQQQSTVTQC 179
           H ++ WG  W++  T  +C
Sbjct: 160 HGVIGWGATWEKSKTQMEC 178


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 19/66 (28%), Positives = 26/66 (39%)
 Frame = +1

Query: 64  GGLLTPLVAPVLXXXXXXXXXXXXXXXXXXYYGNLVAGSIVSQLTAAAMVAPTP*GDAKH 243
           G L+TP V PV+                    G    GSI++Q + A  V P P   +K 
Sbjct: 630 GALVTPSVPPVIATVSKTNTTNTGVQQRGNV-GVTTTGSILTQSSPALPVQPVPLAYSKP 688

Query: 244 HPFSTS 261
            P + S
Sbjct: 689 APTTKS 694


>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 216

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 8/30 (26%), Positives = 13/30 (43%)
 Frame = +3

Query: 36  GRRCCNIWHWGSVDSISGSRARFQLSGNSG 125
           G  C N+W     + + G R  + + G  G
Sbjct: 56  GEICFNVWDTAGQEKLGGLRDGYYIQGQCG 85


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +3

Query: 36  GRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSR 140
           G R C    W S+D +S S A  Q  G      +R
Sbjct: 287 GGRYCETVGWLSIDGLSASNATRQYVGRPVTNETR 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,338,615
Number of Sequences: 5004
Number of extensions: 23333
Number of successful extensions: 47
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)