Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16e19
         (514 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr...    48   8e-07
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    29   0.31 
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    26   2.9  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   3.8  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    26   3.8  
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    25   5.0  
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|...    25   5.0  
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2...    25   6.7  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    25   6.7  
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom...    25   8.8  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   8.8  
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo...    25   8.8  
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    25   8.8  

>SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 178

 Score = 48.0 bits (109), Expect = 8e-07
 Identities = 24/67 (35%), Positives = 36/67 (53%)
 Frame = +2

Query: 203 CGESVQKPKVEKHYLTKCRNKNPNLSCMDCFKDFLGKDYESHIKCITEEERYSGKGFTAK 382
           C + ++KPK+++H   + R      +C+DC   F   DY +H  C+TE +RY  KG    
Sbjct: 7   CQDIIKKPKLDQH---RSRCHGAYFTCIDCNTTFERTDYRNHTSCMTEAQRYQ-KGLYRP 62

Query: 383 EKKGEKK 403
            KK  KK
Sbjct: 63  TKKELKK 69


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 29.5 bits (63), Expect = 0.31
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 248 TKCRNKNPNLSCMDCFKDFLGKDYESHIKCITEEERYSG 364
           T    K  NL   D +  FL K YE+ IK + EE++  G
Sbjct: 270 TVAHQKISNLPTTDLWSFFLDKRYETRIKKLKEEQKDQG 308


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = -1

Query: 166 TCELGLFVLNAKCITLNLKMISILFSLVYVVLWITVLYFC---KLLCVKLFF 20
           TC + LF+      ++++   ++L  L    L I +LYF     L C+ LF+
Sbjct: 335 TCSVCLFLTYVGGFSVHMMKTTMLIGLTATTLIIFILYFATAQTLPCLALFY 386


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 311 KDYESHIKCITEEERYSGKGFTAKEKK 391
           KD +   K + +   Y GKGFT   +K
Sbjct: 259 KDVDESAKALMKARTYPGKGFTLASRK 285


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 15  YTKNSLTHKSLQKYKTVIHKTTY 83
           Y  +SLTH   + Y  V+H  TY
Sbjct: 44  YADSSLTHLRKKSYTKVVHDCTY 66


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 30  LTHKSLQKYKTVIHKTTYTSEN 95
           L+   L K+KT+I+K   T+EN
Sbjct: 609 LSDDELSKWKTIIYKENLTAEN 630


>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = +3

Query: 99  ILIIFKFKVIHFAFKTNSPNSHVFYKKWLFLHAVIVGSLFRSPKWKSIIS 248
           +L+   F +  + F T   N     K WL  H++  GS      ++  IS
Sbjct: 11  VLLAIVFYIFTYGFSTYRKNDTSAVKTWLEEHSIPYGSRSSPSDFQQFIS 60


>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
           Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +2

Query: 371 FTAKEKKGE---KKQNAWVEMLQSVLDEQKSAPQNVRRIIETISKHNNTP 511
           F  + KK E   KK   WVE+ +    +Q S+ ++  ++++     NN P
Sbjct: 4   FAPRNKKTEQEAKKSIPWVELYRPKTLDQVSSQESTVQVLKKTLLSNNLP 53


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1057

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/43 (23%), Positives = 24/43 (55%)
 Frame = +2

Query: 293  FKDFLGKDYESHIKCITEEERYSGKGFTAKEKKGEKKQNAWVE 421
            F+D   KD +      T++++ +     AKE++  +++ AW++
Sbjct: 998  FEDLSEKDLKKIEAKATKKKKLTRNEIKAKERRARERELAWLQ 1040


>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 163

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -2

Query: 408 FCFFSPFFSLAVKP-FPEYLSSSVMHLI 328
           + FFSP FSL++ P    YLS +V +++
Sbjct: 77  YLFFSPPFSLSIGPSLLVYLSIAVSYML 104


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 8/36 (22%), Positives = 21/36 (58%)
 Frame = +3

Query: 330 SSALLKKKDTLEKVSQLRRKRVRKNKMLGWRCCSQF 437
           +S+  K  D++  + ++    V + +M+ W+C S++
Sbjct: 365 NSSPFKLGDSIWLIERMMDLNVAEERMIDWKCLSEY 400


>SPBC947.07 |||ribosome biogenesis protein
           Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = +2

Query: 332 KCITEEERYSGKGFTAKEKKGEKKQNAWVEMLQSVLDEQKSAPQNVRRIIETISKHNNTP 511
           K + + E+   K    KEK+ +K  +AW E      +E+K+     +R  E + K   + 
Sbjct: 160 KKLKDNEQLLKKSIRRKEKEKKKSSDAWKERKD---NEKKAMLMRQQRREENLKKRRESK 216

Query: 512 R 514
           +
Sbjct: 217 K 217


>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 350 ERYSGKGFTAKEKKGEKKQNAWVEM 424
           E Y+G GF A+++K  +    WV++
Sbjct: 296 EGYNGYGFDARKRKSWETYPLWVQV 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,294,194
Number of Sequences: 5004
Number of extensions: 49872
Number of successful extensions: 152
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)