Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt16e19
(514 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0484 - 22621614-22621676,22621798-22621911,22622006-226224... 56 1e-08
01_05_0485 - 22628999-22629325,22630340-22630450,22630888-226310... 31 0.54
06_03_0815 - 24905641-24905874,24905974-24906044,24906678-249068... 29 2.9
06_03_0083 + 16374830-16374922,16375917-16375974,16377893-163780... 28 3.8
04_02_0031 + 8874025-8874180,8882152-8882550,8882651-8882987,888... 28 3.8
09_01_0113 + 1751204-1751507,1751791-1752039,1753136-1753398,175... 27 6.7
04_04_1624 - 34849385-34849410,34849748-34851052,34852121-348522... 27 6.7
04_04_1566 + 34458976-34459111,34459761-34459915,34459996-344600... 27 6.7
12_02_1186 + 26791153-26791666,26791906-26792025,26792303-26792409 27 8.8
02_01_0073 - 509377-509425,510200-510270,510420-510539,510684-51... 27 8.8
01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755 27 8.8
>01_05_0484 -
22621614-22621676,22621798-22621911,22622006-22622453,
22623052-22623179,22623747-22623821,22623954-22624040
Length = 304
Score = 56.4 bits (130), Expect = 1e-08
Identities = 26/77 (33%), Positives = 42/77 (54%)
Frame = +2
Query: 179 MVVFTCSHCGESVQKPKVEKHYLTKCRNKNPNLSCMDCFKDFLGKDYESHIKCITEEERY 358
MV F C CG+ ++KPK+ H+ + + LSC+DC + F + + H +CI+E E+Y
Sbjct: 1 MVWFQCEDCGDDLKKPKLAGHFRSCSAYR---LSCIDCGEFFTQETVQGHTQCISEAEKY 57
Query: 359 SGKGFTAKEKKGEKKQN 409
KG + KQ+
Sbjct: 58 GPKGQNKASNNAQGKQD 74
>01_05_0485 -
22628999-22629325,22630340-22630450,22630888-22631034,
22631283-22631337,22631761-22632134,22632926-22633000,
22633419-22633670
Length = 446
Score = 31.1 bits (67), Expect = 0.54
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 275 LSCMDCFKDFLGKDYESHIKCITEEERY 358
LSC+DC + F + + H +CI+ E+Y
Sbjct: 85 LSCIDCGESFSQETVQGHAQCISGAEKY 112
>06_03_0815 -
24905641-24905874,24905974-24906044,24906678-24906847,
24906862-24906955,24907904-24907948,24908599-24909631
Length = 548
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +3
Query: 129 HFAFKTNSPNSHVFYKKWLFLHAVIVGSLFRSPKWKSIISLNVGIKIQ 272
H+A NS H+ + ++ + A + SLF+ P I + V + Q
Sbjct: 461 HYANFPNSVRKHILFVIFVLMDAEVRNSLFKEPVLHDAIKIGVNFRNQ 508
>06_03_0083 +
16374830-16374922,16375917-16375974,16377893-16378089,
16378176-16378292,16378437-16378497,16378603-16378691,
16378808-16378882,16378992-16379080,16379203-16379252,
16379539-16379699,16380004-16380132,16380548-16380928
Length = 499
Score = 28.3 bits (60), Expect = 3.8
Identities = 21/95 (22%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Frame = +3
Query: 138 FKTNSPNSHVFYKKWLFLHAVI-VGSLFRSPKWKSIISLNVGIKIQICHVWTVSKIF*EK 314
F N P+ +F+ HA + F W SI+ + VGI +Q+ + ++
Sbjct: 312 FWFNRPDWVLFFIHLTLFHATPGLKKCFHENIWLSIVEVIVGISLQVLCSYITFPLY--A 369
Query: 315 IMNRISSALLK---KKDTLEKVSQLRRKRVRKNKM 410
++ ++ S + K ++ T++ + R+K + K K+
Sbjct: 370 LVTQMGSNMKKTIFEEQTMKALMNWRKKAMEKKKV 404
>04_02_0031 +
8874025-8874180,8882152-8882550,8882651-8882987,
8883234-8884060
Length = 572
Score = 28.3 bits (60), Expect = 3.8
Identities = 16/87 (18%), Positives = 39/87 (44%)
Frame = +2
Query: 185 VFTCSHCGESVQKPKVEKHYLTKCRNKNPNLSCMDCFKDFLGKDYESHIKCITEEERYSG 364
V+ H ES +K K ++ + K DC ++L ++ +H+K +++
Sbjct: 461 VYLMRHKSESFEKFKKFQNEVQNHLGKTTKYLRSDCGGEYLSLEFGNHLKKCGIAPQFTP 520
Query: 365 KGFTAKEKKGEKKQNAWVEMLQSVLDE 445
G E++ ++M++S++ +
Sbjct: 521 PGTPQWNGVSERRNRTLLDMVRSMMSQ 547
>09_01_0113 +
1751204-1751507,1751791-1752039,1753136-1753398,
1755192-1755357,1755445-1755534,1756376-1756674,
1757022-1757231
Length = 526
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 24 NSLTHKSLQKYKTVIHKTTYTSENKILIIFKFKVIHFAFKTNSPN 158
++LT+ L KT+IH+ +S + ++ KV F F + P+
Sbjct: 348 HALTYLHLYAEKTIIHRDVKSSNILLTESYRAKVSDFGFARSGPS 392
>04_04_1624 -
34849385-34849410,34849748-34851052,34852121-34852294,
34852386-34852456,34852563-34852618,34853047-34853185,
34853310-34853695,34853801-34853851,34853936-34854021,
34854112-34854553,34856241-34856315,34856457-34856593,
34856679-34856838,34856917-34857012,34857093-34857247,
34857900-34858032
Length = 1163
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 203 CGESVQKPKVEKHYLTKCRNKNPNLSCMDC 292
CG + + KVEK LT + NP +C +C
Sbjct: 199 CGRAEAEEKVEKLNLTSEQINNPQSACGNC 228
>04_04_1566 +
34458976-34459111,34459761-34459915,34459996-34460091,
34460170-34460329,34460415-34460551,34460650-34460724,
34460826-34460864
Length = 265
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 203 CGESVQKPKVEKHYLTKCRNKNPNLSCMDC 292
CG + + KVEK LT + NP +C +C
Sbjct: 200 CGRAEAEEKVEKLNLTSEQINNPQSACGNC 229
>12_02_1186 + 26791153-26791666,26791906-26792025,26792303-26792409
Length = 246
Score = 27.1 bits (57), Expect = 8.8
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -1
Query: 109 MISILFSLVYVVLWITVLYFCKLLCV 32
+ ++LF+L+ +++W LY LCV
Sbjct: 109 LTTVLFTLLSIIVWAVFLYGAAKLCV 134
>02_01_0073 - 509377-509425,510200-510270,510420-510539,510684-510769,
510843-510915,510996-511718,513752-514081,514124-514210,
514494-515250,515336-515399,515477-515609,515702-515801,
515952-516088,516195-516341,516428-516478,517083-517148
Length = 997
Score = 27.1 bits (57), Expect = 8.8
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 254 CRNKNPNL-SCMDCFKDFLGKDYESHIKCITEEERYSGKGFTAKEKKGEKKQNAWVEMLQ 430
C ++ NL SC+ DF+ + +TEE R KG E K E K+ A + Q
Sbjct: 910 CPHQVRNLKSCIKVALDFVSPENVQECIRLTEEFRLLPKGHRVNEDKLEVKKIALYALDQ 969
Query: 431 SVLD 442
++ D
Sbjct: 970 AIDD 973
>01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755
Length = 482
Score = 27.1 bits (57), Expect = 8.8
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = +2
Query: 311 KDYESHIKCITEEERYSGKGF---TAKEKKGEKKQNAWVEMLQSVLDEQKSAPQNVRRII 481
KDYE I+ + + T K+ EK+ A E L V D+Q+S VR I+
Sbjct: 166 KDYEEEIERLKSDNAALSSELQNNTLKKLNMEKRMQALEEKLFVVEDQQRSLISYVREIV 225
Query: 482 E 484
+
Sbjct: 226 K 226
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,368,902
Number of Sequences: 37544
Number of extensions: 265003
Number of successful extensions: 688
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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