Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16e17
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   1.7  
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17...    27   2.2  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    26   3.8  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    25   6.7  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   8.9  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   8.9  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   8.9  
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    25   8.9  

>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 400  NVANKIYIKEGDYELDPKLKKDAVEVFDADFEKVN 504
            + ++  Y+K+G +EL   +  D   V D DF+ V+
Sbjct: 1256 STSDNFYLKQGGFELLDTIITDFSNVMDPDFDDVS 1290


>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 268

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +1

Query: 127 IKNPVLSMDSKALSSAITKFSAKFCNELDKKKNVVSSPLSAEYLLALITLGTTD 288
           I++P+L+        +I K++A+  NEL       S PL AE+     ++G  D
Sbjct: 48  IRSPILTRQPSEFEKSIYKYNAELWNEL-------SDPLPAEFYFKKGSVGEKD 94


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 145 SMDSKALSSAITKFSAKFCNELDKKKNVVS 234
           S DSK+L   +  F++K C E+DKK  +++
Sbjct: 10  SCDSKSLG--VDDFTSKRCREIDKKALLIT 37


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +1

Query: 133 NPVLSMDS--KALSSAITKFSAKFCNELDKKKNVVSSPLSAEYLLALITLGTTDPAHEEL 306
           NP +S+D   KAL S  +   +   N      NV SSP      L+ +    TD + +E 
Sbjct: 255 NPEISLDEPIKALPSTTSDAPSSLLNT-----NVSSSPSKFRKFLSSVIPAKTDLSAKES 309

Query: 307 LTS 315
           LTS
Sbjct: 310 LTS 312


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1272

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 504  VNFFKICIEYLDSV-LLKFWVELIVTLLDVY 415
            V  F+ C + + +  +  FW+EL+ TLL VY
Sbjct: 1101 VPLFEQCTKEVSAEDVTNFWLELVFTLLLVY 1131


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = -2

Query: 347 ERIVSSSGIPRLVNSSSCAGSVVPKVINASKYSADNGDDTTFFFLSSSLQNFAENLVIAE 168
           E +  S    +  +S S  G++    +N+ K+S +    T      S LQNF+E L + +
Sbjct: 500 ELVQQSHSYKKPSDSKSVGGNIFS--VNSKKHSVNINAKTAANNGLSHLQNFSEEL-LKK 556

Query: 167 DKAFESI 147
            K F S+
Sbjct: 557 RKLFSSL 563


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 314  LVNSSSCAGSVVPKVINASKYSADNGDD 231
            L+  SS   SV PK++NA  Y+    DD
Sbjct: 1006 LLQISSKLSSVAPKILNAVLYNLVVSDD 1033


>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 105 NTIYTIGNKEPCSQYGFKGFILCNHQVL 188
           NTI T  N++  + +  KG  L  HQ+L
Sbjct: 117 NTILTPENRKRTASFSTKGVSLSQHQLL 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,985,089
Number of Sequences: 5004
Number of extensions: 38093
Number of successful extensions: 116
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)