Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt16e17
(516 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.1
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.1
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.1
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.1
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.1
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.1
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 24 1.1
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 24 1.1
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 24 1.1
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 21 7.5
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 21 10.0
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.1
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +1
Query: 16 GISILLSNTVFLNV 57
G++ILLS TVFLN+
Sbjct: 229 GVTILLSLTVFLNL 242
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.1
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +1
Query: 16 GISILLSNTVFLNV 57
G++ILLS TVFLN+
Sbjct: 229 GVTILLSLTVFLNL 242
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.1
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +1
Query: 16 GISILLSNTVFLNV 57
G++ILLS TVFLN+
Sbjct: 229 GVTILLSLTVFLNL 242
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.1
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +1
Query: 16 GISILLSNTVFLNV 57
G++ILLS TVFLN+
Sbjct: 229 GVTILLSLTVFLNL 242
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.1
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +1
Query: 16 GISILLSNTVFLNV 57
G++ILLS TVFLN+
Sbjct: 229 GVTILLSLTVFLNL 242
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.1
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +1
Query: 16 GISILLSNTVFLNV 57
G++ILLS TVFLN+
Sbjct: 229 GVTILLSLTVFLNL 242
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.8 bits (49), Expect = 1.1
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +1
Query: 16 GISILLSNTVFLNV 57
G++ILLS TVFLN+
Sbjct: 297 GVTILLSLTVFLNL 310
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.8 bits (49), Expect = 1.1
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +1
Query: 16 GISILLSNTVFLNV 57
G++ILLS TVFLN+
Sbjct: 297 GVTILLSLTVFLNL 310
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 23.8 bits (49), Expect = 1.1
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +1
Query: 16 GISILLSNTVFLNV 57
G++ILLS TVFLN+
Sbjct: 266 GVTILLSLTVFLNM 279
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.5
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +1
Query: 16 GISILLSNTVFL 51
GIS LLS TVFL
Sbjct: 248 GISALLSMTVFL 259
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 20.6 bits (41), Expect = 10.0
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +1
Query: 16 GISILLSNTVFL 51
GISILLS VFL
Sbjct: 268 GISILLSLVVFL 279
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,393
Number of Sequences: 438
Number of extensions: 2198
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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