Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16e14
         (266 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    23   9.6  
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po...    23   9.6  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    23   9.6  

>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1328

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -3

Query: 141  LRFDF-NQSCSGFCSDSFYGFRFNNHNFFCNYFWLNSF 31
            L+FD  NQ   GF   S  G+ F+N        ++N+F
Sbjct: 995  LKFDARNQKVLGFSRKSTKGWEFSNKTVALVKEYINTF 1032


>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
 Frame = -1

Query: 263 FFYAASYIKNN-IHXXXXXXLQNYKTIK*YID 171
           FF  AS+  NN +H        +YK I  Y D
Sbjct: 280 FFEMASHFSNNKMHKERLQEFSSYKNIDDYYD 311


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 135  FDFNQSCSGFCSDSFY 88
            F   ++CSGFC++S +
Sbjct: 1431 FKAMRACSGFCNESLH 1446


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 688,862
Number of Sequences: 5004
Number of extensions: 9291
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)