Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16e02
         (611 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0133 - 5661860-5662034,5662229-5662384,5663849-5663874           29   2.2  
12_01_0317 + 2417147-2417587,2417622-2418134                           29   2.9  
04_04_1704 - 35481041-35481461,35481682-35481810,35482291-354823...    29   3.8  
01_07_0291 + 42555233-42555444,42556515-42556550,42556652-425567...    28   6.7  

>10_02_0133 - 5661860-5662034,5662229-5662384,5663849-5663874
          Length = 118

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
 Frame = +3

Query: 366 EGMSLDEGRQSQRPYRYGMVL-LCAGALINWLGLAEDY---AEPVRYVGVACIVAGALLI 533
           E M  DEG + +  + +G  L   A A     G+AEDY     PVR  GV+C    AL+ 
Sbjct: 29  ELMEDDEGDEQEEHHHHGAKLRTTAEAPPYGHGVAEDYWWRDVPVRLPGVSCGAVLALVD 88

Query: 534 CAAMCCWLQSPA 569
             A   W  S A
Sbjct: 89  YEATPAWWSSRA 100


>12_01_0317 + 2417147-2417587,2417622-2418134
          Length = 317

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -2

Query: 541 AAQMSSAPATMHATPTYRTGSA*SSARPSQLISAPAHNNTMPYL 410
           +A + + P+T+  T +YR   A SS+ P QL    AH+   P L
Sbjct: 38  SAAVQAQPSTLSVTASYRVALASSSSPPLQLRLTWAHSPLGPTL 81


>04_04_1704 -
           35481041-35481461,35481682-35481810,35482291-35482397,
           35482515-35482583,35482825-35482936,35483013-35483131,
           35483211-35483291,35483629-35483700,35484039-35484239,
           35484442-35484528,35485284-35485523,35485991-35486455,
           35487434-35487556,35487643-35487769,35487851-35487919,
           35488061-35488189,35488628-35488722,35488808-35488876,
           35489332-35489443,35489545-35489663,35489753-35489833,
           35490898-35490969,35491052-35491267,35491524-35491601,
           35491694-35491831,35492403-35492414,35492639-35492872,
           35493076-35493130,35493222-35493352,35493813-35494546,
           35494613-35494820
          Length = 1634

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 519 RRRCTPRPHIAPVPRSLQPDP 457
           R    PRPH++P+P +L  DP
Sbjct: 119 RPTARPRPHVSPLPCALHADP 139


>01_07_0291 +
           42555233-42555444,42556515-42556550,42556652-42556796,
           42556885-42556938,42557130-42557260,42557830-42558056,
           42558670-42558846,42558928-42559076
          Length = 376

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +3

Query: 372 MSLDEGRQSQRPYRYGMVLL 431
           + LDEG +S++PYR+  VLL
Sbjct: 94  LMLDEGSRSKKPYRWQRVLL 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,683,158
Number of Sequences: 37544
Number of extensions: 327486
Number of successful extensions: 900
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)