Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16e02
         (611 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X13293-1|CAA31655.1|  700|Homo sapiens protein ( Human mRNA for ...    31   3.2  
BC053555-1|AAH53555.1|  700|Homo sapiens v-myb myeloblastosis vi...    31   3.2  
BC007585-1|AAH07585.1|  700|Homo sapiens v-myb myeloblastosis vi...    31   3.2  
AL121886-2|CAC08392.1|  700|Homo sapiens v-myb myeloblastosis vi...    31   3.2  
AK223482-1|BAD97202.1|  700|Homo sapiens MYB-related protein B v...    31   3.2  
AL158069-1|CAD18889.1|  472|Homo sapiens transmembrane protein 2...    30   5.6  
AJ549246-1|CAD70489.1|  105|Homo sapiens putative DYT3 protein p...    30   5.6  
AF087142-1|AAC62086.1|  473|Homo sapiens TED protein protein.          30   5.6  

>X13293-1|CAA31655.1|  700|Homo sapiens protein ( Human mRNA for
           B-myb gene. ).
          Length = 700

 Score = 31.1 bits (67), Expect = 3.2
 Identities = 19/42 (45%), Positives = 25/42 (59%)
 Frame = +1

Query: 4   LRAVTTQTTSVSFLRLRKRNSLTICSRDVAALPYIPTRAVNF 129
           L  VT  +TS+SFL     NSLT  S  V  LP+ P++ +NF
Sbjct: 420 LSPVTENSTSLSFLD--SCNSLTPKSTPVKTLPFSPSQFLNF 459


>BC053555-1|AAH53555.1|  700|Homo sapiens v-myb myeloblastosis viral
           oncogene homolog (avian)-like 2 protein.
          Length = 700

 Score = 31.1 bits (67), Expect = 3.2
 Identities = 19/42 (45%), Positives = 25/42 (59%)
 Frame = +1

Query: 4   LRAVTTQTTSVSFLRLRKRNSLTICSRDVAALPYIPTRAVNF 129
           L  VT  +TS+SFL     NSLT  S  V  LP+ P++ +NF
Sbjct: 420 LSPVTENSTSLSFLD--SCNSLTPKSTPVKTLPFSPSQFLNF 459


>BC007585-1|AAH07585.1|  700|Homo sapiens v-myb myeloblastosis viral
           oncogene homolog (avian)-like 2 protein.
          Length = 700

 Score = 31.1 bits (67), Expect = 3.2
 Identities = 19/42 (45%), Positives = 25/42 (59%)
 Frame = +1

Query: 4   LRAVTTQTTSVSFLRLRKRNSLTICSRDVAALPYIPTRAVNF 129
           L  VT  +TS+SFL     NSLT  S  V  LP+ P++ +NF
Sbjct: 420 LSPVTENSTSLSFLD--SCNSLTPKSTPVKTLPFSPSQFLNF 459


>AL121886-2|CAC08392.1|  700|Homo sapiens v-myb myeloblastosis viral
           oncogene homolog (avian)-like 2 protein.
          Length = 700

 Score = 31.1 bits (67), Expect = 3.2
 Identities = 19/42 (45%), Positives = 25/42 (59%)
 Frame = +1

Query: 4   LRAVTTQTTSVSFLRLRKRNSLTICSRDVAALPYIPTRAVNF 129
           L  VT  +TS+SFL     NSLT  S  V  LP+ P++ +NF
Sbjct: 420 LSPVTENSTSLSFLD--SCNSLTPKSTPVKTLPFSPSQFLNF 459


>AK223482-1|BAD97202.1|  700|Homo sapiens MYB-related protein B
           variant protein.
          Length = 700

 Score = 31.1 bits (67), Expect = 3.2
 Identities = 19/42 (45%), Positives = 25/42 (59%)
 Frame = +1

Query: 4   LRAVTTQTTSVSFLRLRKRNSLTICSRDVAALPYIPTRAVNF 129
           L  VT  +TS+SFL     NSLT  S  V  LP+ P++ +NF
Sbjct: 420 LSPVTENSTSLSFLD--SCNSLTPKSTPVKTLPFSPSQFLNF 459


>AL158069-1|CAD18889.1|  472|Homo sapiens transmembrane protein 28
           protein.
          Length = 472

 Score = 30.3 bits (65), Expect = 5.6
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +3

Query: 516 AGALLICAAMCCWLQSPARQP--QNERA 593
           A AL IC   CCW   P+ +P   +ERA
Sbjct: 13  AAALTICCCCCCWAPRPSDKPCADSERA 40


>AJ549246-1|CAD70489.1|  105|Homo sapiens putative DYT3 protein
           protein.
          Length = 105

 Score = 30.3 bits (65), Expect = 5.6
 Identities = 18/56 (32%), Positives = 22/56 (39%)
 Frame = +3

Query: 414 YGMVLLCAGALINWLGLAEDYAEPVRYVGVACIVAGALLICAAMCCWLQSPARQPQ 581
           +G +LL  G     LG A      V   G    V    L    +CCW   PAR P+
Sbjct: 2   HGALLLLRGLGFLLLGRARGDVVVVAVAGRVLTVLVVALPPRTLCCWTSPPARPPR 57


>AF087142-1|AAC62086.1|  473|Homo sapiens TED protein protein.
          Length = 473

 Score = 30.3 bits (65), Expect = 5.6
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +3

Query: 516 AGALLICAAMCCWLQSPARQP--QNERA 593
           A AL IC   CCW   P+ +P   +ERA
Sbjct: 13  AAALTICCCCCCWAPRPSDKPCADSERA 40


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,790,241
Number of Sequences: 237096
Number of extensions: 1617189
Number of successful extensions: 3744
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3744
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6522878360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)