Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16e02
         (611 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.77 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.1  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    21   9.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   9.5  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   9.5  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   9.5  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   9.5  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    21   9.5  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 472 SSARPSQLISAPAHNNTMPYLYGLCDCLPSS 380
           S  R S+ ++A AH+   P     CD +P +
Sbjct: 55  SGTRSSESLTAQAHHRLYPAFSSSCDPVPGN 85


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 37  SFLRLRKRNSLTICSRDVAALP 102
           SFL LR+ ++L I   +V ALP
Sbjct: 142 SFLGLRELHTLEIVESNVQALP 163


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +3

Query: 411 RYGMVLLCAGALINWLGLAEDYAEPVRYVGVACIVA 518
           R+  +++   +L+ W    E Y++   YV +  I+A
Sbjct: 2   RHNYIVILILSLLTWTYAEELYSDKYDYVNIDEILA 37


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 404 AIQVWHGVVMC 436
           A+ VW GV MC
Sbjct: 362 AMNVWDGVCMC 372


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 404 AIQVWHGVVMC 436
           A+ VW GV MC
Sbjct: 331 AMNVWDGVCMC 341


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 404 AIQVWHGVVMC 436
           A+ VW GV MC
Sbjct: 382 AMNVWDGVCMC 392


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 404 AIQVWHGVVMC 436
           A+ VW GV MC
Sbjct: 331 AMNVWDGVCMC 341


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +3

Query: 411 RYGMVLLCAGALINWLGLAEDYAEPVRYVGVACIVA 518
           R+  +++   +L+ W    E Y++   YV +  I+A
Sbjct: 2   RHNYIVILILSLLTWTYAEELYSDKYDYVNIDEILA 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,214
Number of Sequences: 438
Number of extensions: 3246
Number of successful extensions: 19
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)