Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt16d24
(643 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0102 - 826827-827411 63 2e-10
10_08_0647 - 19576672-19577259 58 4e-09
04_04_0826 - 28453018-28453284,28453286-28453594 44 8e-05
07_03_1194 - 24708281-24708796,24708990-24708996,24709199-24709866 33 0.25
04_01_0609 + 7966263-7966366,7967945-7968706,7972607-7972851,797... 31 0.59
03_05_0845 - 28155065-28155374,28156201-28156342,28156375-281565... 30 1.4
04_01_0477 - 6221990-6223224,6227722-6228817 29 4.1
11_01_0468 + 3629974-3631051,3631102-3632649,3632766-3633133 28 5.5
12_01_0121 - 920988-921296,921556-921620,921874-921923,922009-92... 28 7.2
07_03_1154 - 24402550-24405073,24405909-24406330,24407318-24408856 28 7.2
03_02_0263 - 6948618-6948818,6948909-6948971,6949078-6949146,694... 28 7.2
01_06_0595 - 30485460-30486097,30486721-30487179,30487339-304875... 28 7.2
02_05_1197 - 34908382-34908582,34908664-34908837,34909239-349093... 27 9.6
02_02_0354 + 9283886-9285505,9287158-9287251,9287817-9289915 27 9.6
01_06_1587 + 38468956-38469090,38470599-38470742,38470819-384708... 27 9.6
>03_01_0102 - 826827-827411
Length = 194
Score = 62.9 bits (146), Expect = 2e-10
Identities = 36/122 (29%), Positives = 61/122 (50%)
Frame = +2
Query: 197 PEFLYPDDSHMASTARRSNVALPIIGMSFMTGSGLGGMAGLYKGLRATTLAGQVGKVRRT 376
PEFL+ ++S + N+ G+ +++G+ G GL R G K+R
Sbjct: 46 PEFLFQEESLAQRRSWGENLTY-YTGIGYLSGAVAGAAVGLRDAARNAE-PGDTAKIRAN 103
Query: 377 QVVNYVMKQGTTTGCTLGIIASFYSCIALGVTWLRDKEDTANTFIAASTTGIIYKSTSGL 556
+V+N G G TLG+I Y+ I G+ +RD++D N+ A TG ++++ +G
Sbjct: 104 RVLNSCGSNGRRMGNTLGVIGLLYAGIESGMVAVRDRDDWINSVTAGLGTGALFRAANGP 163
Query: 557 RS 562
RS
Sbjct: 164 RS 165
>10_08_0647 - 19576672-19577259
Length = 195
Score = 58.4 bits (135), Expect = 4e-09
Identities = 40/155 (25%), Positives = 70/155 (45%)
Frame = +2
Query: 98 GDILNKNEQKNNQASANLSPYLNFDPHYIPRMQPEFLYPDDSHMASTARRSNVALPIIGM 277
GD +K N +PY ++ Y PEFL+ ++S + N+ G+
Sbjct: 15 GDASGPGRRKYNPYHDLSTPY-SYQTLYDLPTSPEFLFQEESAAQRRSWGENLTY-YTGV 72
Query: 278 SFMTGSGLGGMAGLYKGLRATTLAGQVGKVRRTQVVNYVMKQGTTTGCTLGIIASFYSCI 457
+++G+ G GL + A G K+R +V+N G G LG+I Y+ +
Sbjct: 73 GYLSGAVAGAALGL-RDAAAGAEPGDTAKIRANRVLNSCGGGGRRLGNRLGVIGLMYAGM 131
Query: 458 ALGVTWLRDKEDTANTFIAASTTGIIYKSTSGLRS 562
+ RD++D N+ A TG ++++ +G RS
Sbjct: 132 ESAMVAARDRDDWVNSVAAGLGTGALFRAANGPRS 166
>04_04_0826 - 28453018-28453284,28453286-28453594
Length = 191
Score = 44.4 bits (100), Expect = 8e-05
Identities = 34/134 (25%), Positives = 57/134 (42%)
Frame = +2
Query: 161 LNFDPHYIPRMQPEFLYPDDSHMASTARRSNVALPIIGMSFMTGSGLGGMAGLYKGLRAT 340
++F Y PEFL+ +++ + ++ G ++ G G AGL +
Sbjct: 29 ISFRELYDLPTSPEFLFHEEALRSRRTCGEDLTF-YTGCGYLVGRAAGAAAGLKRAAEEA 87
Query: 341 TLAGQVGKVRRTQVVNYVMKQGTTTGCTLGIIASFYSCIALGVTWLRDKEDTANTFIAAS 520
G+ K+R G G LG++A + I V LRD + ANT A
Sbjct: 88 E-RGESMKLRGQPRPQPCGSLGRAYGNRLGVVALLFVGIESTVGGLRDADGWANTVAAGI 146
Query: 521 TTGIIYKSTSGLRS 562
TG +Y++ +G R+
Sbjct: 147 GTGALYRAAAGPRA 160
>07_03_1194 - 24708281-24708796,24708990-24708996,24709199-24709866
Length = 396
Score = 32.7 bits (71), Expect = 0.25
Identities = 44/160 (27%), Positives = 64/160 (40%), Gaps = 3/160 (1%)
Frame = +2
Query: 95 FGDILNKNEQ-KNNQASANLSPYL-NFDPHYIPRMQPEFLYPDDSHMASTARRSNVALPI 268
FG + K E+ K S S L +FD P E+ M + L
Sbjct: 184 FGSLFGKKEEEKKASPSGGKSEMLESFDTPSTPIPTFEYNKKARPSMERDPCPDRI-LDD 242
Query: 269 IGMSFMTGSGLGGMAGLYKGLRATTLAGQ-VGKVRRTQVVNYVMKQGTTTGCTLGIIASF 445
IG SF G+ G KGLR + + G + ++ + G C L F
Sbjct: 243 IGASFGMGAVGGSFFHFVKGLRNSPSGARFAGGMEGVRMNAPRVAGGFAVWCGL-----F 297
Query: 446 YSCIALGVTWLRDKEDTANTFIAASTTGIIYKSTSGLRSM 565
+C V+ +R KED N+ IA + TG I + GLR++
Sbjct: 298 SACDCALVS-VRQKEDPYNSIIAGAATGGILAARQGLRAV 336
>04_01_0609 +
7966263-7966366,7967945-7968706,7972607-7972851,
7976940-7977107,7977471-7977734,7977962-7978509
Length = 696
Score = 31.5 bits (68), Expect = 0.59
Identities = 19/68 (27%), Positives = 27/68 (39%)
Frame = -1
Query: 565 H*TKTRCAFVNDTSG*GCYESVCCVFFVSKPSYPKGYA*VKRCNNSKCAACSRTLLHNII 386
H ++CA N TSG Y C ++ P P G V C N+ T +
Sbjct: 335 HSNHSKCA--NVTSGLDGYFCNCSEGYIGNPYIPDGCKDVNECENNSICGAGSTCKNTEG 392
Query: 385 NYLCPSHF 362
+Y C +F
Sbjct: 393 SYRCDCNF 400
>03_05_0845 -
28155065-28155374,28156201-28156342,28156375-28156505,
28156591-28156784,28156859-28156969,28157234-28157399,
28157501-28157668,28157766-28158787
Length = 747
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = +2
Query: 143 ANLSPYLNFDPHYIPRMQPEFLYPDDSHMASTARRSNVALPIIGMSFMTGSGLGGMAGLY 322
AN S Y + +PR F +PD S + RS V +P I +F G GG +
Sbjct: 174 ANGSRYDGVWENGVPRGTGVFTWPDGSRYVGSWPRSCVDMPAISGTFFPPVGAGGGGAVR 233
Query: 323 K 325
K
Sbjct: 234 K 234
>04_01_0477 - 6221990-6223224,6227722-6228817
Length = 776
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +1
Query: 472 LASRQRR-HSKHFHSSLNHWYHLQKHI 549
LA RR H SL HWYH KH+
Sbjct: 212 LAGHSRRCRPAQLHGSLLHWYHSIKHM 238
>11_01_0468 + 3629974-3631051,3631102-3632649,3632766-3633133
Length = 997
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = +2
Query: 428 GIIASFYSCIALGVTWLRDKEDTANTFIAASTTGIIYKSTSGLRSMGS 571
GII SF +C L V WL D D A F G+ S R +G+
Sbjct: 136 GIIPSFANCSELTVLWL-DHNDLAGGFPGGLPLGLQELQLSSNRLVGT 182
>12_01_0121 -
920988-921296,921556-921620,921874-921923,922009-922106,
923832-923867,925351-925731,925839-926324,926471-926647
Length = 533
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +2
Query: 257 ALPIIGMSFMTGSGLGGMAGLYKGLRATTLAGQVGKVRRTQVVNYV 394
AL ++G+ G L G + LRA + KVR ++V +V
Sbjct: 325 ALVLVGIVHKAGEALEGYIQTHSQLRANIMGKMSKKVRHDEIVEHV 370
>07_03_1154 - 24402550-24405073,24405909-24406330,24407318-24408856
Length = 1494
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 287 TGSGLGGMAGLYKGLRATTLAGQVGKVRRTQVVN 388
TG+G G M GL KG+ A + Q+ + R Q+ N
Sbjct: 785 TGAGKGPMEGLLKGMEAWNVV-QLASILRQQLEN 817
>03_02_0263 -
6948618-6948818,6948909-6948971,6949078-6949146,
6949232-6949297,6949380-6949526,6949608-6949702,
6949845-6950016,6952187-6952318,6953581-6953674,
6954067-6954184,6955884-6957057
Length = 776
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -2
Query: 333 LSPLYNPAIPPKPEPVIKDIP 271
LSPL +P+ PP+P+P + +P
Sbjct: 87 LSPLPSPSPPPQPQPQAQPLP 107
>01_06_0595 -
30485460-30486097,30486721-30487179,30487339-30487558,
30488229-30489980
Length = 1022
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 206 LYPDDSH-MASTARRSNVALPIIGMSFMTGSGLGGMAGLYKG 328
L+P S +AS+ + ALP++ + TG+ GG+ G Y G
Sbjct: 272 LFPVKSERLASSTSSDSDALPLLVEAAATGARNGGIGGSYSG 313
>02_05_1197 -
34908382-34908582,34908664-34908837,34909239-34909337,
34909444-34909644,34910229-34910336,34910498-34910882,
34911132-34911584,34911868-34912094,34912211-34912270
Length = 635
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 56 LVLQIKNETKMSIFGDILNKNEQKNNQASANLSPYLNFDPH 178
LVL +K+ + GD + EQ Q ++ PY F P+
Sbjct: 502 LVLSCSYSSKVWLVGDGVTDEEQMKAQKGSHFVPYSQFPPN 542
>02_02_0354 + 9283886-9285505,9287158-9287251,9287817-9289915
Length = 1270
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +2
Query: 68 IKNETKMSIFGDILNKNEQKNNQASANLSPYLNFDPHYIP 187
+KN + ++L +E KN Q++ ++ P L Y+P
Sbjct: 439 LKNNLSHECWTEVLEMDEWKNLQSNVDIMPALKISYDYLP 478
>01_06_1587 +
38468956-38469090,38470599-38470742,38470819-38470845,
38470970-38471060,38471224-38471267,38471352-38471450,
38472233-38472331,38472545-38472646,38472758-38472823,
38472960-38473084,38473175-38473346,38473588-38473674
Length = 396
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +2
Query: 227 MASTARRSNVALPIIGMSFMTGSGLGGMAGLYKGLRATTLAGQVGKVRRTQVVNYV 394
+A+ RRS+ + SF L G++ +YK T L G V V R +N++
Sbjct: 271 VATNLRRSSPLGSLSSSSFSWIFDLNGISDMYKSYEETNLWGIVENVPRGVHINFL 326
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,130,689
Number of Sequences: 37544
Number of extensions: 295579
Number of successful extensions: 1011
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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