Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16d24
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81063-5|CAB02956.1|  242|Caenorhabditis elegans Hypothetical pr...    67   9e-12
Z70756-12|CAA94796.2|  180|Caenorhabditis elegans Hypothetical p...    30   1.6  
U28738-11|AAK68399.3|  166|Caenorhabditis elegans Sr protein (sp...    29   2.1  
AF040647-6|AAR30205.3|  436|Caenorhabditis elegans Hypothetical ...    29   2.1  
AF067220-2|AAC16978.1|  588|Caenorhabditis elegans Hypothetical ...    27   8.6  
AF026208-2|AAB71269.3|  774|Caenorhabditis elegans Prion-like-(q...    27   8.6  

>Z81063-5|CAB02956.1|  242|Caenorhabditis elegans Hypothetical
           protein F15D3.7 protein.
          Length = 242

 Score = 67.3 bits (157), Expect = 9e-12
 Identities = 44/143 (30%), Positives = 66/143 (46%)
 Frame = +2

Query: 140 SANLSPYLNFDPHYIPRMQPEFLYPDDSHMASTARRSNVALPIIGMSFMTGSGLGGMAGL 319
           S  ++PY+  DP      QP+++ P+     +   +   AL  IG +     G+G   G 
Sbjct: 72  SRQMTPYVQMDPSMFASQQPQYIMPEGG--VAGKGKFEFALGHIGWAVGGAFGVGCARGA 129

Query: 320 YKGLRATTLAGQVGKVRRTQVVNYVMKQGTTTGCTLGIIASFYSCIALGVTWLRDKEDTA 499
              L        VGK   T++VN  MK G+      G I   YS + +G+  +R  ED  
Sbjct: 130 LGELMNPETRKMVGKPWMTRMVNATMKHGSGFAQPSGAIVFMYSALEIGLRSVR-AEDEL 188

Query: 500 NTFIAASTTGIIYKSTSGLRSMG 568
           N F A + TG IY+S  GL++ G
Sbjct: 189 NGFGAGALTGAIYRSPHGLKASG 211


>Z70756-12|CAA94796.2|  180|Caenorhabditis elegans Hypothetical
           protein T06E4.10 protein.
          Length = 180

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -2

Query: 351 PARVVALSPLYNPAIPPKP--EPVIKDIPMMGRATFDLLAVEA 229
           PA VVA +P + PA  P P   P+I   P +  A+ + L V A
Sbjct: 98  PAPVVAAAPAFAPAYAPAPVASPMIAAAPALAAASINGLPVAA 140


>U28738-11|AAK68399.3|  166|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform b protein.
          Length = 166

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 478 SRQRRHSKHFHSSLNHWYHLQKHI 549
           SR     + FHSS+ + YHLQ HI
Sbjct: 138 SRSPSPKRDFHSSMRNQYHLQAHI 161


>AF040647-6|AAR30205.3|  436|Caenorhabditis elegans Hypothetical
           protein F54D12.7 protein.
          Length = 436

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +2

Query: 383 VNYVMKQGTTTGCTLGIIASFYSCIALGVTWL 478
           +NY+  QG+TTG T+ +I  FY    L + WL
Sbjct: 267 INYMQFQGSTTGSTVSLI--FYPWDVLKLYWL 296


>AF067220-2|AAC16978.1|  588|Caenorhabditis elegans Hypothetical
           protein C33E10.5 protein.
          Length = 588

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 173 PHYIPRMQPEFLYPDDSHMASTARRSNVALP 265
           P+ IPR++P  L+P  S   S++ R    LP
Sbjct: 327 PNVIPRIEPAMLFPVSSSGPSSSERDISPLP 357


>AF026208-2|AAB71269.3|  774|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 40
           protein.
          Length = 774

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +2

Query: 248 SNVALPIIGMSFMTGSGLGGMAGLYKGLRATTLAGQVGKVRRTQVVNYVMKQGT--TTGC 421
           +++A  ++G +   G+GLG +AG   G      AGQ G         Y + QG    TG 
Sbjct: 25  ASLATSLLGGALGNGAGLGALAG--AGAAGAGAAGQAGGAIAQIGQLYQLAQGALQLTGT 82

Query: 422 TLGII 436
            +G++
Sbjct: 83  GVGVL 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,335,348
Number of Sequences: 27780
Number of extensions: 267961
Number of successful extensions: 936
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)