Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16d21
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce...    26   3.2  
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy...    25   9.7  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   9.7  

>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 399

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 446 ITGTCIQTSYMTPSLVRPVILQFCNQ 369
           +TG  ++  Y+T  LV   +L F NQ
Sbjct: 299 LTGKVVEQEYLTVKLVSKTLLNFSNQ 324


>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 424

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = -2

Query: 213 CIE-CWHNFLRTLYGVYVF 160
           C+E  W NFL+ ++  YVF
Sbjct: 128 CMEFIWDNFLQLMFAAYVF 146


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 298 FLRYAFSFAILAMMGDLLCF 357
           F+RY F+F  L ++G L+ F
Sbjct: 89  FIRYLFTFGALCILGCLVLF 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,088,262
Number of Sequences: 5004
Number of extensions: 39593
Number of successful extensions: 65
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)