Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16d21
         (550 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0169 + 14397380-14397652,14398317-14398874,14399593-143998...    29   3.2  
09_04_0184 - 15393441-15393642,15393789-15393940,15394047-153942...    29   3.2  

>11_04_0169 +
           14397380-14397652,14398317-14398874,14399593-14399823,
           14399924-14400064,14401051-14401248,14401319-14401591,
           14401959-14401976
          Length = 563

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 179 KVLRKLCQHSIQCKNQLVLTEI-IVIKIIR 265
           + LRK   H I CKN++V + + +VI I R
Sbjct: 311 RTLRKRLDHGIYCKNRMVTSNVRLVISIAR 340


>09_04_0184 -
          15393441-15393642,15393789-15393940,15394047-15394208,
          15394372-15394585,15395017-15395297
          Length = 336

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 30 GMWMWYMKYGQCIGVLLV 83
          G W W  +YG C+G+++V
Sbjct: 8  GGWWWVERYGPCVGMVMV 25


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,535,280
Number of Sequences: 37544
Number of extensions: 219460
Number of successful extensions: 366
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)