Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16d17
         (481 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110487-11|CAC42369.1|  624|Caenorhabditis elegans Hypothetical...    29   1.7  
AL110487-10|CAC42368.1|  623|Caenorhabditis elegans Hypothetical...    29   1.7  
AL110487-9|CAB54435.1|  626|Caenorhabditis elegans Hypothetical ...    29   1.7  
AF031837-1|AAC13673.1|  624|Caenorhabditis elegans GLY5c protein.      28   3.1  
AF031836-1|AAC13672.1|  626|Caenorhabditis elegans GLY5b protein.      28   3.1  
AF031835-1|AAC13671.1|  623|Caenorhabditis elegans GLY5a protein.      28   3.1  
U64844-12|AAB18312.4|  417|Caenorhabditis elegans Hypothetical p...    27   5.3  
AC024201-14|AAF36017.1|  139|Caenorhabditis elegans Hypothetical...    27   7.0  
Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical pr...    27   9.3  
U41109-11|AAB37037.2|  204|Caenorhabditis elegans Hypothetical p...    27   9.3  
AL132858-1|CAB60474.1|  325|Caenorhabditis elegans Hypothetical ...    27   9.3  

>AL110487-11|CAC42369.1|  624|Caenorhabditis elegans Hypothetical
           protein Y39E4B.12c protein.
          Length = 624

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +3

Query: 138 GFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGA-SPGKD 302
           GF+  L  NW  + E +    T   +  R+ +   GLF I+ +Y+   G   PG D
Sbjct: 319 GFDWGLQFNWHSIPERDRKNRTRPIDPVRSPTMAGGLFSIDKKYFEKLGTYDPGFD 374


>AL110487-10|CAC42368.1|  623|Caenorhabditis elegans Hypothetical
           protein Y39E4B.12b protein.
          Length = 623

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +3

Query: 138 GFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGA-SPGKD 302
           GF+  L  NW  + E +    T   +  R+ +   GLF I+ +Y+   G   PG D
Sbjct: 319 GFDWGLQFNWHSIPERDRKNRTRPIDPVRSPTMAGGLFSIDKKYFEKLGTYDPGFD 374


>AL110487-9|CAB54435.1|  626|Caenorhabditis elegans Hypothetical
           protein Y39E4B.12a protein.
          Length = 626

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +3

Query: 138 GFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGA-SPGKD 302
           GF+  L  NW  + E +    T   +  R+ +   GLF I+ +Y+   G   PG D
Sbjct: 319 GFDWGLQFNWHSIPERDRKNRTRPIDPVRSPTMAGGLFSIDKKYFEKLGTYDPGFD 374


>AF031837-1|AAC13673.1|  624|Caenorhabditis elegans GLY5c protein.
          Length = 624

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +3

Query: 138 GFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGA-SPGKD 302
           GF+  L  NW  + E +    T   +  R+ +   GLF I+  Y+   G   PG D
Sbjct: 319 GFDWGLQFNWHSIPERDRKNRTRPIDPVRSPTMAGGLFSIDKEYFEKLGTYDPGFD 374


>AF031836-1|AAC13672.1|  626|Caenorhabditis elegans GLY5b protein.
          Length = 626

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +3

Query: 138 GFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGA-SPGKD 302
           GF+  L  NW  + E +    T   +  R+ +   GLF I+  Y+   G   PG D
Sbjct: 319 GFDWGLQFNWHSIPERDRKNRTRPIDPVRSPTMAGGLFSIDKEYFEKLGTYDPGFD 374


>AF031835-1|AAC13671.1|  623|Caenorhabditis elegans GLY5a protein.
          Length = 623

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +3

Query: 138 GFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGA-SPGKD 302
           GF+  L  NW  + E +    T   +  R+ +   GLF I+  Y+   G   PG D
Sbjct: 319 GFDWGLQFNWHSIPERDRKNRTRPIDPVRSPTMAGGLFSIDKEYFEKLGTYDPGFD 374


>U64844-12|AAB18312.4|  417|Caenorhabditis elegans Hypothetical
           protein T22F3.10 protein.
          Length = 417

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 39  MQKLIIFALVVLCVGSEAKTFTRCGLVH 122
           M  L  F L + C+G  +  F +CG++H
Sbjct: 309 MLSLSFFILTMCCIGVNSGGFYKCGVLH 336


>AC024201-14|AAF36017.1|  139|Caenorhabditis elegans Hypothetical
           protein Y71F9B.1 protein.
          Length = 139

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -3

Query: 401 VPGIEAVTFVNFLSAFRCLSDVVSQEVGALNVAVFAWTGAFAAPVPVVDLEQ 246
           VP I ++  +   + +R LS + S   G L  +   WT +    +P +DLE+
Sbjct: 37  VPAILSIIQIPRNATWRTLSSL-SIVAGGLYTSFLLWTFSSVESIPTIDLEE 87


>Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical protein
            C27H6.1 protein.
          Length = 1657

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 343  VMSSVRRSEHLTLQSLPGLAPLLHQYRSLIWNNP 242
            ++ +V+ SE   ++   G A   H YRSL+W  P
Sbjct: 1455 LLGAVQASEPNLIECAIGEAKYEHVYRSLVWRIP 1488


>U41109-11|AAB37037.2|  204|Caenorhabditis elegans Hypothetical
           protein F52E1.2 protein.
          Length = 204

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +3

Query: 162 NWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGAS 290
           N +C+     S   +     R G K YG  + +  Y C KGAS
Sbjct: 161 NGLCVQMITDSLSNATYKYQRGGWKTYGCGKTSASYICEKGAS 203


>AL132858-1|CAB60474.1|  325|Caenorhabditis elegans Hypothetical
           protein Y113G7A.1 protein.
          Length = 325

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +3

Query: 21  SKDTIEMQKLIIFALVV 71
           SK TI+MQ L+IFAL++
Sbjct: 224 SKKTIQMQHLLIFALIL 240


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,350,968
Number of Sequences: 27780
Number of extensions: 198995
Number of successful extensions: 587
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)