Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt16d14
(585 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha... 68 1e-12
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 31 0.094
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 28 0.87
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 27 1.5
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo... 27 2.0
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb... 27 2.7
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.7
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 26 4.7
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 6.2
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg... 25 8.1
SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ... 25 8.1
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 25 8.1
SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.1
>SPBC36.09 |sap61||U2 snRNP-associated protein
sap61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 67.7 bits (158), Expect = 1e-12
Identities = 31/99 (31%), Positives = 56/99 (56%)
Frame = +1
Query: 265 ETILEQQRSYHEERERTMDAMVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELY 444
E++LE +R HEE ER A+V + RE + +H+ +++ E S +L +
Sbjct: 3 ESVLETERYAHEELERLQQAIVDRQVANPKAPRERLRLEHQSAQFLNQFRETSKKLLVSH 62
Query: 445 EDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFHRKHPN 561
E D L+ +E++ ++ + EFY L +I+EFH+K+P+
Sbjct: 63 ESSDRLKDQEVARINADDDLTEFYKSLGEIQEFHKKYPD 101
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 31.5 bits (68), Expect = 0.094
Identities = 22/104 (21%), Positives = 47/104 (45%), Gaps = 14/104 (13%)
Frame = +1
Query: 271 ILEQQRSYHEERERTMDAMVKEILHKKTGHRETINADHRLKNLHDRYIEAS--------- 423
+ +QQR+Y EE R +A + + + E + + + ++HD Y+E++
Sbjct: 785 VAKQQRAYEEEINRIWNAQKRGL---SINNLEELAKKYGINSIHDDYVESNEETTREETP 841
Query: 424 -----IRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKE 540
+R+ LY DK+G + + + P + + ++I E
Sbjct: 842 SSDKVLRIVRLYRDKNGNLERKQETIHDPIVIHAYLKKRREIDE 885
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 28.3 bits (60), Expect = 0.87
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +1
Query: 370 INADHRLKNLHDRYIEASIRLKELYEDKDGLRKEE--ISALSGPHEFQEFYSRLKQIKEF 543
++ HR D IRLK+ L++E+ + + + F ++LK I+ F
Sbjct: 416 VDFSHRTAVSSDILSLCYIRLKDFLRISGSLKEEQSYYGLKNSIKQIKAFENKLKYIQSF 475
Query: 544 HRKH 555
H KH
Sbjct: 476 HEKH 479
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 27.5 bits (58), Expect = 1.5
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Frame = +1
Query: 256 LKMETILEQQRSYHEERERTMDAMVKEILH----KKTGHRETINADHRL-KNLHDRYI-- 414
L + ILE Q Y R ++K +LH T ++E N+ L + LH Y
Sbjct: 1007 LLVTEILEFQALYSASLRRMRSKLIKSLLHLLEIAPTQYQENKNSLLSLCEGLHSTYTDE 1066
Query: 415 EASIRLKELYEDKDGLRKEEISAL 486
E ++ L L+ + +R + AL
Sbjct: 1067 ELNLLLSNLFHPESSIRSAVLQAL 1090
>SPAC20G8.10c ||SPAC3A12.01c|beclin family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 464
Score = 27.1 bits (57), Expect = 2.0
Identities = 17/74 (22%), Positives = 38/74 (51%)
Frame = +1
Query: 286 RSYHEERERTMDAMVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELYEDKDGLR 465
++ HEE +D+ + E++ K+ +E +++ + D + L+EL E+K+ +
Sbjct: 178 QTVHEENTAALDSEIDELM-KQINEKE-----EKIEEISDETDKLQKLLRELDEEKEKVY 231
Query: 466 KEEISALSGPHEFQ 507
EE + ++FQ
Sbjct: 232 AEEQEFYNNLNQFQ 245
>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 730
Score = 26.6 bits (56), Expect = 2.7
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +1
Query: 337 ILHKKTGHRETINADHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGPH--EFQE 510
I++ + RE +N R + + +EA +E E+K S++SG H EF E
Sbjct: 184 IINMRACLREPLNRIARQQEAAQKLVEALEGAQEEIENKSVSGNTNSSSVSGNHAAEFLE 243
Query: 511 FYSRLKQ 531
+ LK+
Sbjct: 244 YVESLKK 250
>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 103
Score = 25.8 bits (54), Expect = 4.7
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +3
Query: 207 YYCILQGD*HKTISITFKNGNNFRATTKLP*GKGKNHGRNGQRNSS 344
+YCIL FK+ +R T P K K R QRNSS
Sbjct: 29 FYCILN-------ERAFKHYKTYRRITDCPEIKNKKSRRKNQRNSS 67
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 433 KELYEDKDGLRKEEISALSGPHEFQEFYSR 522
KE +++D L+KEE + P EF+ F R
Sbjct: 314 KEGLDEQDNLQKEESVHIDVPAEFEAFDER 343
>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 314
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 322 AMVKEILHKKTGHRETINADHRLKN 396
++ K LHK T H T + H KN
Sbjct: 22 SLYKRRLHKSTSHSSTATSSHYSKN 46
>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
diacylglycerol ethanolaminesphotranferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 386
Score = 25.0 bits (52), Expect = 8.1
Identities = 10/40 (25%), Positives = 25/40 (62%), Gaps = 7/40 (17%)
Frame = +1
Query: 136 SIFCMLPYIFSHNLNFKIINH-------YFNIIVFYKVID 234
+IFC+ +IF++++ I++H Y+N+++ ++D
Sbjct: 287 TIFCLNAFIFAYSVGVVIVSHITESPFPYWNVLILPFLVD 326
>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 25.0 bits (52), Expect = 8.1
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = +3
Query: 300 GKGKNHGRNGQRNSSQKNW 356
G+G+ GR G + +K W
Sbjct: 16 GRGRGRGRRGAKRDEEKEW 34
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 25.0 bits (52), Expect = 8.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 509 SSIRDLSKLKSFIENIQMKY 568
SSI+DL + F+EN++ +Y
Sbjct: 81 SSIQDLEGFREFMENLEHRY 100
>SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 261
Score = 25.0 bits (52), Expect = 8.1
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +1
Query: 388 LKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFHRK 552
L+NL + E +LKEL + + L KEE L + + S+ K++K + K
Sbjct: 22 LQNLKE---ETENQLKELEKKRSQLHKEEQINLQLVYAINDLRSKTKELKAENEK 73
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,199,454
Number of Sequences: 5004
Number of extensions: 41295
Number of successful extensions: 146
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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