Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16d14
         (585 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   1.7  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   5.1  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   5.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   6.7  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   6.7  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              21   6.7  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    21   6.7  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 300 GKGKNHGRNGQRNSSQKNWASGDYK 374
           G+G N GR G  N ++    + DY+
Sbjct: 93  GRGGNRGRTGFNNKNKDGDDNNDYE 117



 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 300 GKGKNHGRNGQRNSSQKNWASG 365
           GKG+ HG+ G R        +G
Sbjct: 81  GKGRGHGKGGSRGRGGNRGRTG 102


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +2

Query: 452 KMDYEKKKYQHCQVHMSSRSSIRDLSKLKSFIENIQMKYLY 574
           K + E +KY+      S   + R+ SK    I ++   Y Y
Sbjct: 51  KNEREYRKYRETSKERSQDRTERETSKEPKIISSLSNNYKY 91


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +2

Query: 452 KMDYEKKKYQHCQVHMSSRSSIRDLSKLKSFIENIQMKYLY 574
           K + E +KY+      S   + R+ SK    I ++   Y Y
Sbjct: 51  KNEREYRKYRETSKERSQDRTERETSKEPKIISSLSNNYKY 91


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 473 KYQHCQVHMSSR 508
           + QHC++HM  R
Sbjct: 385 RMQHCELHMQPR 396


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 473 KYQHCQVHMSSR 508
           + QHC++HM  R
Sbjct: 385 RMQHCELHMQPR 396


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 12/54 (22%), Positives = 27/54 (50%)
 Frame = +2

Query: 377 LIIV*RIYMIDILKPL*DLKNCMKIKMDYEKKKYQHCQVHMSSRSSIRDLSKLK 538
           LI++  IY  + +  + D +NC  ++ +    K ++ ++    R+   D+S  K
Sbjct: 15  LILIIFIYSNETIAQVTDDENCETLQSEVHITKDEYDEIGRLKRTCSGDISVTK 68


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 12/54 (22%), Positives = 27/54 (50%)
 Frame = +2

Query: 377 LIIV*RIYMIDILKPL*DLKNCMKIKMDYEKKKYQHCQVHMSSRSSIRDLSKLK 538
           LI++  IY  + +  + D +NC  ++ +    K ++ ++    R+   D+S  K
Sbjct: 15  LILIIFIYSNETIAQVTDDENCETLQSEVHITKDEYDEIGRLKRTCSGDISVTK 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,549
Number of Sequences: 438
Number of extensions: 2641
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)