Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16d09
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    80   2e-16
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1...    27   2.9  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    25   6.7  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 80.2 bits (189), Expect = 2e-16
 Identities = 64/178 (35%), Positives = 82/178 (46%), Gaps = 18/178 (10%)
 Frame = +3

Query: 138 YSFEGIPYAKPPIGKLRFSNPQE-PDQWKGIRSAKSPSNKCAQ------LNPYSNSALVG 296
           + F GI YAKPP+GKLR+  P    D +            C Q       N   N     
Sbjct: 19  HRFTGIRYAKPPVGKLRWRRPVTLEDGYDYSGDYNQFKTICPQPFYNNRKNQVRNPDFKY 78

Query: 297 SEDCLYLNIYTPSLPAEKLEKLPVIFFVHGGRLIVGYGDYY---TPDYLIKN----DVIL 455
            EDCL+LNI+ P+   +  E  PV++F+HGG L VG   +Y    P  L  +      IL
Sbjct: 79  DEDCLFLNIWVPA-GEKPAEGWPVLYFIHGGWLQVGNPLHYRQCDPQDLQADGSPAKFIL 137

Query: 456 VTLNYRLNVLGFLCLN--LPEAP--GNVGIKDTVYALRWVGRNISRFNGNPGNITVSG 617
           V+  +RLN+ GFL     L E P   N G  D    L W  ++I  F GN  NI V G
Sbjct: 138 VSPGHRLNLFGFLAGKELLEEDPKSSNFGFWDQRLGLEWTYKHIESFGGNKENIAVGG 195


>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 507 PEAPGNVGIKDTVYALRWVGRNISRFNGNP 596
           PE+   V   D + + +WV  NI +   NP
Sbjct: 133 PESKFPVAHNDAIDSFKWVASNIEKLGANP 162


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
            Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +3

Query: 405  YGDYYTPDYLIKNDVILVTLNYRLNVL 485
            YG  Y PDY+I ++++L +  Y +N++
Sbjct: 1067 YGLGYLPDYVIYHELVLTSKEY-MNIV 1092


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,527,272
Number of Sequences: 5004
Number of extensions: 52620
Number of successful extensions: 139
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)