Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16d08
         (389 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.16 |||ribosome biogenesis protein Rrs1 |Schizosaccharom...    26   2.4  
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe...    25   3.1  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    25   3.1  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   3.1  
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    25   4.1  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    25   5.5  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    24   7.2  
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|...    24   9.5  

>SPBC29A3.16 |||ribosome biogenesis protein Rrs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 362 FNRKKSNKRTLVNRHVSLPQSRSS 291
           F+  + N + LVN+ +SLP+ R+S
Sbjct: 41  FSLSRDNVQQLVNKMISLPKERTS 64


>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +1

Query: 22  YKEKLICILSILFLKNKLKKTIGNVSGASS*RYTDHISG 138
           Y+++      ++FL++ L +  GN+  +S   YT++ SG
Sbjct: 100 YRQRKSVYPMLMFLRSSLLRNFGNIGNSS--LYTENYSG 136


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 336 NTRQSPCIASAISIQSMALHKSS 268
           N RQ  C++S  S  S+AL KSS
Sbjct: 434 NERQRQCLSSCSSHLSLALQKSS 456


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +2

Query: 68   INSKKLSATFRGHPLDGTQITFPEGYRAVLVTETKRPLTEDAERKFQVTGGFKNFT 235
            + S K S T   + L+  Q T P+G       E    L +++ER  Q  GG K ++
Sbjct: 1734 LKSNKFSGT---NDLNFQQATKPDGSNKSSYMERLEKLKQNSERHLQSVGGKKVYS 1786


>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 383 FSFNKCQFNRKKSNKRTLVNRHVSLPQSRSSPWLY 279
           FSF K   N++ S+   + N   S P+SRS   +Y
Sbjct: 44  FSFAKLGRNQRTSSLIKIHNSSTSFPKSRSEKVVY 78


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 4/29 (13%)
 Frame = +1

Query: 13  NEDYK----EKLICILSILFLKNKLKKTI 87
           N+DY+    E L+ + S +F+KNKL+  I
Sbjct: 886 NDDYQVLVCENLVGLFSCVFVKNKLQSKI 914


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -3

Query: 318 CIASAISIQSMALHKSSFFDGFLSQFQYV 232
           C+    S+   ALH   F++ F S ++Y+
Sbjct: 318 CLVELESVFYKALHDEKFWEEFRSYYEYM 346


>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 570

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 240 QYVKFLKPPVTWNFLSAS 187
           Q+++ LK P+TW F  A+
Sbjct: 320 QFIEALKDPITWLFTFAA 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,510,205
Number of Sequences: 5004
Number of extensions: 27156
Number of successful extensions: 69
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)