Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16d08
         (389 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0514 - 3718795-3718860,3719349-3719524,3719785-3719877,371...    52   2e-07
11_03_0158 + 10911997-10912078,10912203-10912288,10913780-109138...    29   0.99 
05_04_0432 + 21178662-21178798,21178973-21179033,21179260-211793...    26   9.2  

>02_01_0514 -
           3718795-3718860,3719349-3719524,3719785-3719877,
           3719961-3720111
          Length = 161

 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
 Frame = +2

Query: 89  ATFRGHPLDGTQITFPEGYRAVLVTETK----RPLTEDAERKFQVTGGFKNFTYWNWDKK 256
           A FRG  L G  I+ P+GYR  ++ +          E     F+    F+N TYWN D  
Sbjct: 62  AFFRGRKLQGATISLPDGYRGYVLEKRSGGKDMKKLEGEVSNFKSRAEFQNITYWNHDTT 121

Query: 257 PSKNDDLCKAMDWIEIAEAIH 319
           PS  D L +    + +A A+H
Sbjct: 122 PSAEDPLPRCFHLLTVANAMH 142


>11_03_0158 +
           10911997-10912078,10912203-10912288,10913780-10913857,
           10913967-10914098,10914385-10914435,10914529-10914669,
           10914754-10914876,10914989-10915066,10915448-10915541,
           10915633-10915739,10915936-10916019,10916649-10916744,
           10916835-10917023,10917705-10917780,10918507-10918610,
           10918708-10918967,10920000-10920086,10920184-10920411,
           10920752-10920826,10921264-10921346,10921552-10921661
          Length = 787

 Score = 29.5 bits (63), Expect = 0.99
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 164 ETKRPLTEDAERKFQVTGGFKNFTYWNWDKKPSKNDDLCK 283
           E + PL   A+R+F    G K+F   +WD K S   D  +
Sbjct: 477 EVETPLDVPAKRRFAKYRGLKSFRTSSWDPKESLPQDYAR 516


>05_04_0432 +
           21178662-21178798,21178973-21179033,21179260-21179339,
           21179650-21179794,21180411-21180620,21180956-21181004,
           21181199-21181326
          Length = 269

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +2

Query: 215 GGFKNFTYWNWDKKPSKNDDLCKAMDWI 298
           G   ++ YWNWD +   ++   + + WI
Sbjct: 230 GQMLHYLYWNWDPEELHDEQYQQRIAWI 257


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,446,010
Number of Sequences: 37544
Number of extensions: 166792
Number of successful extensions: 385
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)