Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16d08
         (389 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   3.8  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   5.0  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   5.0  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   6.6  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -3

Query: 300 SIQSMALHKSSFFDGFLS-QFQYVK 229
           S+ S+ L  S FFD F++ Q Q +K
Sbjct: 298 SVTSVRLISSGFFDNFVTVQIQPLK 322


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 10/47 (21%), Positives = 22/47 (46%)
 Frame = +2

Query: 77  KKLSATFRGHPLDGTQITFPEGYRAVLVTETKRPLTEDAERKFQVTG 217
           KK  +   G+P     +     +  ++V +TK+ + E+A ++    G
Sbjct: 17  KKSYSIENGYPARRRSLVDDARFETLVVKQTKQSVLEEARQRANDAG 63


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 282 LHKSSFFDGFLSQFQYVKFLKPPV 211
           + K  +FDGF  +    + L+PP+
Sbjct: 620 IQKHKWFDGFNWEGLRARTLEPPI 643


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 125 SVYRQEDAPETLPIVFLS 72
           S++RQ D  +  P +F+S
Sbjct: 391 SIFRQTDDHQNSPSIFIS 408


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,991
Number of Sequences: 438
Number of extensions: 1663
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)