Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16d06
         (328 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy...    28   0.31 
SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyce...    27   0.95 
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    26   1.3  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    25   3.8  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    24   5.1  
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po...    24   6.7  
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa...    23   8.8  

>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 538

 Score = 28.3 bits (60), Expect = 0.31
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -1

Query: 274 REKKNHKNLGNTAKYTSPFC-HFTADVKGIHRNTSRTLEIN 155
           R  KN   + N+     P   H T+ + G+H NTS    IN
Sbjct: 166 RAHKNQNQVTNSVVNEHPLIPHSTSQISGVHSNTSSNSGIN 206


>SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score = 26.6 bits (56), Expect = 0.95
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -3

Query: 302 LWDTSENEQKRKEKPQKLRQHS*VHEPVLPL 210
           + + SE+ + R  KP+KL QH  ++ P+ PL
Sbjct: 153 IMNPSESLKDRVLKPEKLSQHLLLNSPIDPL 183


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +1

Query: 4   SESGHGTCGRVMSWCSXYFKFDIWRVFHLGL 96
           +E GH T   ++SW S  F    W     G+
Sbjct: 418 AEVGHSTSDSLISWASRLFTKGFWYAISFGV 448


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 101 SNKPK*KTRQMSNLKXYEHQLITRPHVPCP 12
           S  P  KT   S L  YEH+L   P+ P P
Sbjct: 113 SLNPSKKTNSNSPLCLYEHRLYGIPNPPFP 142


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 253 NLGNTAKYTSPFCHFTADVKGIHRNTSRTLE 161
           NLG++ +  SPFC        + +  S+TL+
Sbjct: 13  NLGDSNRAVSPFCLPDCSENAVAQTRSKTLD 43


>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 12/34 (35%), Positives = 24/34 (70%)
 Frame = -3

Query: 281 EQKRKEKPQKLRQHS*VHEPVLPLHSRRQRNSQK 180
           +Q+++++ Q+ +QH+   EPVL   S+RQ+  +K
Sbjct: 154 QQQQQQQQQQHQQHATPSEPVL---SKRQQKLRK 184


>SPAC1805.05 |cki3||serine/threonine protein kinase
           Cki3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 439

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -1

Query: 289 PKTNKREKKN-HKNLGNTAKYTSPFCH 212
           PKT+     N HK+L  TA+Y S   H
Sbjct: 167 PKTHVHRPYNEHKSLSGTARYMSINTH 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,028,971
Number of Sequences: 5004
Number of extensions: 15536
Number of successful extensions: 48
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)