Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16d06
         (328 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0194 - 19107143-19108055,19110864-19111132                       34   0.030
01_05_0250 - 19907517-19908429,19910000-19910268                       32   0.093
05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,753...    29   0.86 
08_01_1081 + 11058119-11059756                                         27   3.5  
03_06_0155 - 32031370-32031707,32033066-32033279                       26   6.1  
02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,879...    26   6.1  
03_05_0777 + 27636342-27637115                                         26   8.0  

>01_05_0194 - 19107143-19108055,19110864-19111132
          Length = 393

 Score = 33.9 bits (74), Expect = 0.030
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = -1

Query: 304 SCGIPPKTNKREKKNHKNLGNTAKYTSPFCHFTAD---VKGIHRNTSRTLEINRK 149
           +C I  K NKR+ K  K L       S  CHF  D   ++G  +N  + L  +RK
Sbjct: 100 NCTIRIKNNKRKAKRRKKLNTCQNSISYLCHFCGDQNLIRGSGKNIMKGLLSSRK 154


>01_05_0250 - 19907517-19908429,19910000-19910268
          Length = 393

 Score = 32.3 bits (70), Expect = 0.093
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = -1

Query: 304 SCGIPPKTNKREKKNHKNLGNTAKYTSPFCHFTAD---VKGIHRNTSRTLEINRK 149
           +C I  K NKR+ K  K L       S  CHF  D   ++G  +N  + L   RK
Sbjct: 100 NCTIRIKNNKRKAKRRKKLNTCQNSISYLCHFCGDQNLIRGSGKNIMKGLLSLRK 154


>05_03_0031 -
           7534327-7534480,7535546-7535649,7535724-7535793,
           7535889-7535932,7536042-7536146,7536223-7536344,
           7536807-7536894,7536966-7537052,7537718-7537786,
           7537859-7538188,7539777-7539824,7540003-7540069,
           7540150-7540208,7541220-7541453,7541536-7541601,
           7541684-7541883,7542104-7542197,7542295-7542414,
           7542596-7542703,7542808-7542871,7543378-7543409,
           7546049-7548007
          Length = 1407

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 292 PPKTNKREKKNHKNLGNTAKYTSPFC 215
           PP+  KR+KKNH +L   A  T   C
Sbjct: 12  PPRIEKRKKKNHNSLSGKAPPTRGNC 37


>08_01_1081 + 11058119-11059756
          Length = 545

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -3

Query: 296 DTSENEQKRKEKPQKLRQHS*VHEPVLPLHSRRQRNSQK 180
           +T E ++K+K+K +K        EP L +  ++ +N +K
Sbjct: 301 ETKETKKKKKKKRRKNNDDDEEEEPGLKVKKKKNKNEEK 339


>03_06_0155 - 32031370-32031707,32033066-32033279
          Length = 183

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 216 ATSQPTSKEFTEILVEHLK 160
           A+ + T K FTE+L+E LK
Sbjct: 84  ASGEETEKSFTELLIEELK 102


>02_01_0014 -
           87215-87280,87358-87495,87593-87721,87801-87869,
           87962-88042,88133-88237,88338-88568,88665-90197,
           90660-90752,91477-92887,93184-93305,93479-93718,
           94521-94682,94770-94937,95025-95141,95266-95376,
           95919-96506
          Length = 1787

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 260 PQKLRQHS*VHEPVLPLHSRRQR 192
           P ++  H   +E V+P HSRRQR
Sbjct: 561 PSQVLPHDKDNESVMPSHSRRQR 583


>03_05_0777 + 27636342-27637115
          Length = 257

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -1

Query: 307 GSCGI-PPKTNKREKKNHKNLGNTAKYTSPFC 215
           GS G  PPKT     K+ +  G+ A + SP C
Sbjct: 8   GSHGCDPPKTMANAVKSKRRYGDNAAFVSPPC 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,306,536
Number of Sequences: 37544
Number of extensions: 85261
Number of successful extensions: 185
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)