Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16d01
         (566 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006617-8|AAF39772.2|  309|Caenorhabditis elegans Hypothetical ...    33   0.19 
Z81513-6|CAB04176.1|  341|Caenorhabditis elegans Hypothetical pr...    30   1.0  
Z81549-6|CAB04475.1|  523|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z75546-3|CAA99891.1|  581|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z82090-6|CAB51468.1|  278|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z81526-10|CAB51464.1|  278|Caenorhabditis elegans Hypothetical p...    28   5.4  
Z81055-9|CAB02898.3|  562|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z70286-4|CAA94291.2|  533|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AJ582070-1|CAE46540.1|  533|Caenorhabditis elegans flavin monoox...    28   5.4  
Z66500-1|CAA91303.1|  325|Caenorhabditis elegans Hypothetical pr...    27   7.1  
U40416-1|AAA81410.2|  822|Caenorhabditis elegans Protein kinase ...    27   7.1  
AF403714-1|AAK97497.1|  822|Caenorhabditis elegans serine/threon...    27   7.1  
Z66500-13|CAA91312.1| 1780|Caenorhabditis elegans Hypothetical p...    27   9.4  
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z48334-10|CAA88315.1| 1780|Caenorhabditis elegans Hypothetical p...    27   9.4  
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass...    27   9.4  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    27   9.4  

>AC006617-8|AAF39772.2|  309|Caenorhabditis elegans Hypothetical
           protein C39B5.9 protein.
          Length = 309

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -3

Query: 159 RYFSFVEHLHNFSHWHGVFFKYDKFIRIADNLVLTSGEFSCEPVQLEEFHPV 4
           +Y   + HL NF  +  + F     I+I D+L+  S   SCE + + E HP+
Sbjct: 209 KYIEHLFHLQNFYIYEMIDFSTQAAIKIRDDLMRRSTFESCE-IYIREAHPI 259


>Z81513-6|CAB04176.1|  341|Caenorhabditis elegans Hypothetical
           protein F26D2.7 protein.
          Length = 341

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = -3

Query: 324 KRLIVKNKRFERSQVLAFVVEWIDENKELEWE--STFSTSRQHESFRHVTELFRHIKRYF 151
           + +I KN  FE S V  F++   +EN  ++W+  S   ++     F++   +F  +K YF
Sbjct: 163 REVIRKNFDFEISSVARFIMMPYNENNTIQWKALSLLISAGILICFQYFIFVFFGLKIYF 222

Query: 150 SFVEHLHNFS 121
           +    L +FS
Sbjct: 223 NMKLRLKSFS 232


>Z81549-6|CAB04475.1|  523|Caenorhabditis elegans Hypothetical
           protein F55C9.7 protein.
          Length = 523

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
 Frame = -3

Query: 522 LWILRMQN----SSVYLNL---IFWNNIRLCVIRRNIEFVREPFTLVVNENILEIHV 373
           +W+ R+ N    S +YL+L     WNN  +C  RRN+ ++    T +++ N   +HV
Sbjct: 377 VWLQRIVNQFSGSFLYLDLDVNSIWNNQIMCTNRRNL-YISTSCTELLSVNCTHLHV 432


>Z75546-3|CAA99891.1|  581|Caenorhabditis elegans Hypothetical
           protein R05D11.4 protein.
          Length = 581

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = -3

Query: 285 QVLAFVVEWIDENKELEWESTFSTSRQHESFRHVTELFRHI--KRYFSFVEHLHNFSHWH 112
           + LAF +  IDE  EL+  + +S+S   +    V E  R +  + Y  F+++  N S   
Sbjct: 176 KTLAFALPVIDEILELKQRADYSSSNSSKLLAVVLEPTRELAAQTYTEFLKYCANTSISA 235

Query: 111 GVFFKYDKFIRIADNLVLT 55
             F   +  I+ AD LV T
Sbjct: 236 ANFSGEETDIQHADILVST 254


>Z82090-6|CAB51468.1|  278|Caenorhabditis elegans Hypothetical
           protein ZK337.5 protein.
          Length = 278

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +1

Query: 52  AGQNKIIRNSNEFVIFKEDSVPMTEIMKMLDEGKVPFDMS 171
           AG NK     NE  ++ ++ + +TE+++ ++  KVP D S
Sbjct: 225 AGSNKC----NEHAMWADEGISLTEMLEEIEARKVPVDSS 260


>Z81526-10|CAB51464.1|  278|Caenorhabditis elegans Hypothetical
           protein ZK337.5 protein.
          Length = 278

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +1

Query: 52  AGQNKIIRNSNEFVIFKEDSVPMTEIMKMLDEGKVPFDMS 171
           AG NK     NE  ++ ++ + +TE+++ ++  KVP D S
Sbjct: 225 AGSNKC----NEHAMWADEGISLTEMLEEIEARKVPVDSS 260


>Z81055-9|CAB02898.3|  562|Caenorhabditis elegans Hypothetical
           protein F01G10.10 protein.
          Length = 562

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -3

Query: 462 IRLCVIRRNIEFVREPFTLVVNENILEIHVRNLE*CINNGAI 337
           I L ++   + ++RE    V+NE IL++ + N+   I NG +
Sbjct: 39  IYLRIMPNGLAYLREVGMKVINEQILKLQLPNIREPIENGEV 80


>Z70286-4|CAA94291.2|  533|Caenorhabditis elegans Hypothetical
           protein K08C7.2 protein.
          Length = 533

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = -3

Query: 309 KNKRFERSQVLAFVVEWIDENKELEWESTFSTSRQHESFRHVTELFRHIKRYFSFVE 139
           K +  E S V+   V  I+ +KE+   S F    +  +F H TE++R++  Y    E
Sbjct: 47  KPQETELSSVMKTTV--INTSKEMTAYSDFPPESRMANFMHNTEMYRYLLNYSKHYE 101


>AJ582070-1|CAE46540.1|  533|Caenorhabditis elegans flavin
           monooxygenase protein.
          Length = 533

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = -3

Query: 309 KNKRFERSQVLAFVVEWIDENKELEWESTFSTSRQHESFRHVTELFRHIKRYFSFVE 139
           K +  E S V+   V  I+ +KE+   S F    +  +F H TE++R++  Y    E
Sbjct: 47  KPQETELSSVMKTTV--INTSKEMTAYSDFPPESRMANFMHNTEMYRYLLNYSKHYE 101


>Z66500-1|CAA91303.1|  325|Caenorhabditis elegans Hypothetical
           protein T05C12.1 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = -3

Query: 282 VLAFVVEWIDENKELEWE 229
           +LA+ V+++D+N E EW+
Sbjct: 304 ILAYCVKFVDDNAEFEWD 321


>U40416-1|AAA81410.2|  822|Caenorhabditis elegans Protein kinase
           protein 29 protein.
          Length = 822

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 9/49 (18%)
 Frame = +1

Query: 109 SVPMTEIMKMLDEG----KVPFDMSEEFCYMP-----KRLMLPRGTEGG 228
           ++P TE++  L       K+PF  S E  Y P     +RL LP G E G
Sbjct: 729 TLPFTEVIDELKASLNILKIPFSESHEMVYEPQVTEMRRLSLPSGVEIG 777


>AF403714-1|AAK97497.1|  822|Caenorhabditis elegans serine/threonine
           kinase KIN-29 protein.
          Length = 822

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 9/49 (18%)
 Frame = +1

Query: 109 SVPMTEIMKMLDEG----KVPFDMSEEFCYMP-----KRLMLPRGTEGG 228
           ++P TE++  L       K+PF  S E  Y P     +RL LP G E G
Sbjct: 729 TLPFTEVIDELKASLNILKIPFSESHEMVYEPQVTEMRRLSLPSGVEIG 777


>Z66500-13|CAA91312.1| 1780|Caenorhabditis elegans Hypothetical
           protein F10B5.7 protein.
          Length = 1780

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 395 SFTTRVNGSLTNSIFLRMTHSLMLFQKI 478
           SFT+R+ G L + +FL +     LF KI
Sbjct: 277 SFTSRITGMLHDQVFLEVPKMHTLFTKI 304


>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
            F47A4.2 protein.
          Length = 3498

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 358  MHQQRGDPEGSQEAYCQEQKIRKEPSP 278
            M+Q   +P+G  ++Y Q+Q +  +P P
Sbjct: 2949 MNQGSSNPQGGMQSYQQQQPVLGQPGP 2975


>Z48334-10|CAA88315.1| 1780|Caenorhabditis elegans Hypothetical
           protein F10B5.7 protein.
          Length = 1780

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 395 SFTTRVNGSLTNSIFLRMTHSLMLFQKI 478
           SFT+R+ G L + +FL +     LF KI
Sbjct: 277 SFTSRITGMLHDQVFLEVPKMHTLFTKI 304


>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform b protein.
          Length = 4034

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/49 (26%), Positives = 20/49 (40%)
 Frame = -3

Query: 252  ENKELEWESTFSTSRQHESFRHVTELFRHIKRYFSFVEHLHNFSHWHGV 106
            E +E+  E   S S  HE   +    + H   ++S     H  S  HG+
Sbjct: 1304 ELREMRSEEKRSNSMHHEESHYAHSSYEHTSEHYSQSSFYHQESDEHGL 1352


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/49 (26%), Positives = 20/49 (40%)
 Frame = -3

Query: 252  ENKELEWESTFSTSRQHESFRHVTELFRHIKRYFSFVEHLHNFSHWHGV 106
            E +E+  E   S S  HE   +    + H   ++S     H  S  HG+
Sbjct: 1304 ELREMRSEEKRSNSMHHEESHYAHSSYEHTSEHYSQSSFYHQESDEHGL 1352


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,183,343
Number of Sequences: 27780
Number of extensions: 296252
Number of successful extensions: 841
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)