Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16c19
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    57   2e-09
SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|...    53   4e-08
SPAC17H9.11 |||cofilin/tropomyosin family protein|Schizosaccharo...    28   0.97 
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    27   1.7  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    27   2.3  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    27   3.0  
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    26   3.9  
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    26   3.9  

>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 1/147 (0%)
 Frame = +2

Query: 131 MSHQTGIQANAELKKYISKCRDSKLRVLKVTIENEQLTMAKHFSTKG-TWEHDFDKYVPS 307
           MS    ++   +  K++ +     +R   ++I NE     K    K  + E DF K    
Sbjct: 1   MSASVELKPTEKFSKFLEEYSSVPVRAAIISISNENSFDVKTMVEKSESIESDFKKVREC 60

Query: 308 LIEEDQPCYILYRFDSKNSLGHEWLLLSWSPDSAPVRQKMLYASTKATLKQEFGSAHIKD 487
           L+  ++P ++L   DSK +L     L+S+ P++A VR+KMLYAS++A   +    A + +
Sbjct: 61  LLGSEEPAFVLVYDDSKKNLLQ---LISYVPENANVRRKMLYASSRAAFVRCVTLAKLDE 117

Query: 488 EMHATVKEEVSLKGYKAHLSGVSAPAP 568
              A+  EE+  +     LS     +P
Sbjct: 118 SYFASTPEELDYQQIMKSLSKQEDQSP 144


>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 52.8 bits (121), Expect = 4e-08
 Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 3/88 (3%)
 Frame = +2

Query: 266 KGTWEHDFDKYVPSLIEEDQPC-YILYRFDSKNSLG--HEWLLLSWSPDSAPVRQKMLYA 436
           K + + DFD ++  L E+D  C Y +Y F+     G  ++ + +SWSPD AP++ KM+Y+
Sbjct: 43  KKSTDKDFDTFLGDLPEKD--CRYAIYDFEFNLGEGVRNKIIFISWSPDVAPIKSKMVYS 100

Query: 437 STKATLKQEFGSAHIKDEMHATVKEEVS 520
           S+K TL++ F    I  ++ AT   EV+
Sbjct: 101 SSKDTLRRAF--TGIGTDIQATDFSEVA 126


>SPAC17H9.11 |||cofilin/tropomyosin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 141

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
 Frame = +2

Query: 311 IEEDQPCYILYRFDSKNSLGH---EWLLLSWSPDSAPVRQKMLYASTKATLKQEFGSAH 478
           + E  P +IL  + +K + G       ++ W P + P    M+YAS K    Q+    H
Sbjct: 63  LSETNPRFILVSYPTKTTDGRLSTPLFMIYWRPSATPNDLSMIYASAKVWF-QDVSQVH 120


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 43  FLQLFAYIILSIVFLSNNYNILESCTYIYNVA 138
           +L LF  + L I  + NN+ +LE C  I N A
Sbjct: 420 WLWLFRMLNLRIASMGNNHTLLEKCLLITNHA 451


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 224 IENEQLTMAKHFSTKGTWEHDFDKYVPSL 310
           I+N  L +    ST G W  +F+K+ PSL
Sbjct: 461 IQNRHLVVVPS-STLGNWLREFEKFCPSL 488


>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = +2

Query: 164 ELKKYISKCRDSKLRVLKVTIENEQLTMAKHFSTKGTWEHDFDKYVPSLIEEDQPCYILY 343
           +L K IS C   +L V    I++E + +    S    +  DF  + P+ + ED P    Y
Sbjct: 129 QLLKGISDCH--RLGVCHGDIKSENILIT---SWNWAYLSDFSSFKPTYLPEDNPADYGY 183

Query: 344 RFDSKN 361
            FD+ +
Sbjct: 184 FFDTSS 189


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = +2

Query: 383 LLSWSPDSAPVRQKMLYASTKATLKQEFGSAHIKDEMHATVKEEVSLKGYKAHLSGVSAP 562
           LLS+ P +   RQ  LY++T   + + F   H+       + +E++L+G   + + V   
Sbjct: 210 LLSYFPKN---RQISLYSATFPLIVKNFMDKHLNKPYEINLMDELTLRGVTQYYAFVDES 266

Query: 563 APPH 574
              H
Sbjct: 267 QKVH 270


>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 421 ENAICFNESHIETRIWFRPY*G*DACNC*GRSLSERLQG 537
           EN +C N S  +T +W +   G   CN  G  L  RL G
Sbjct: 415 ENLVCANCSSTKTSLWRKDRHGQTVCNACG--LYARLHG 451


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,570,961
Number of Sequences: 5004
Number of extensions: 54570
Number of successful extensions: 163
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)