Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt16c19
(634 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0174 - 32141956-32141985,32143658-32144452,32147645-321477... 48 8e-06
02_05_0221 - 26938764-26938914,26940039-26940361,26940391-26940393 47 1e-05
12_02_1198 - 26922570-26922720,26922893-26923158,26923646-26923666 47 1e-05
07_03_0397 + 17686852-17686888,17687452-17687701,17688168-17688318 44 1e-04
05_01_0103 + 686770-687017,687120-687270 44 1e-04
03_06_0480 + 34218403-34218405,34219071-34219127,34220047-342203... 44 1e-04
04_04_0752 - 27791126-27791167,27791792-27791863,27792771-277928... 41 7e-04
03_06_0479 + 34217170-34217172,34217337-34217786 41 7e-04
10_08_0658 - 19642103-19642259,19642831-19643102,19643346-19643378 36 0.027
07_02_0007 - 11675832-11675988,11676719-11676975,11676989-11677084 35 0.047
09_04_0321 - 16664316-16664939,16665369-16666262 29 3.1
06_03_0220 + 18276641-18276915,18278445-18278676 27 9.4
>03_06_0174 -
32141956-32141985,32143658-32144452,32147645-32147759,
32148134-32148399,32150193-32150213
Length = 408
Score = 47.6 bits (108), Expect = 8e-06
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 4/102 (3%)
Frame = +2
Query: 209 VLKVTIENEQLTMAKHFSTKGTWEHDFDKYVPSLIEEDQPC-YILYRFD---SKNSLGHE 376
+ K+ + +Q+ + K G +D ++ SL E D C Y LY FD +N +
Sbjct: 37 IFKIEEKQKQVVVEK----TGATTESYDDFLASLPEND--CRYALYDFDFVTGENVQKSK 90
Query: 377 WLLLSWSPDSAPVRQKMLYASTKATLKQEFGSAHIKDEMHAT 502
++WSP ++ +R KMLY+++K +KQE H E+ AT
Sbjct: 91 IFFIAWSPSTSRIRAKMLYSTSKDRIKQELDGFHY--EIQAT 130
>02_05_0221 - 26938764-26938914,26940039-26940361,26940391-26940393
Length = 158
Score = 47.2 bits (107), Expect = 1e-05
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 3/114 (2%)
Frame = +2
Query: 191 RDSKLRVLKVTIENEQLTMAKHFSTKGTWEHDFDKYVPSLIEEDQPCYILYRFD---SKN 361
R + V K+ E Q + G DF +P+ D+ Y ++ FD +N
Sbjct: 44 RSFRFIVFKIN-EKVQQVVVDRLGQPGESYDDFTACLPA----DECRYAVFDFDFVTDEN 98
Query: 362 SLGHEWLLLSWSPDSAPVRQKMLYASTKATLKQEFGSAHIKDEMHATVKEEVSL 523
+ +SW+PD++ VR KMLYAS+K K+E I+ E+ AT E+S+
Sbjct: 99 CQKSKIFFISWAPDTSRVRSKMLYASSKDRFKRELDG--IQVELQATDPSEMSM 150
>12_02_1198 - 26922570-26922720,26922893-26923158,26923646-26923666
Length = 145
Score = 46.8 bits (106), Expect = 1e-05
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Frame = +2
Query: 269 GTWEHDFDKYVPSLIEEDQPC-YILYRFD---SKNSLGHEWLLLSWSPDSAPVRQKMLYA 436
G+ FD ++ SL E D C Y +Y FD +N + ++WSP + +R KMLYA
Sbjct: 53 GSSTESFDDFMDSLPESD--CRYAIYDFDFVTEENCQKSKIFFVAWSPSVSRIRAKMLYA 110
Query: 437 STKATLKQEFGSAHIKDEMHATVKEEVSLK 526
++K ++E H E+ AT E+ ++
Sbjct: 111 TSKERFRRELDGVHY--EIQATDPSELDIE 138
>07_03_0397 + 17686852-17686888,17687452-17687701,17688168-17688318
Length = 145
Score = 44.0 bits (99), Expect = 1e-04
Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 6/132 (4%)
Frame = +2
Query: 146 GIQANAELK---KYISKCRDSKLRVLKVTIENEQLTMAKHFSTKGTWEHDFDKYVPSLIE 316
G+ N E K + + R + V K+ + ++ + + T +E DF +P+
Sbjct: 13 GLAVNDECKFKFQELKTRRGFRFIVFKIDDKAMEIKVERLGQTAEGYE-DFAATLPA--- 68
Query: 317 EDQPCYILYRFD---SKNSLGHEWLLLSWSPDSAPVRQKMLYASTKATLKQEFGSAHIKD 487
D+ Y +Y D +N + SWSPD+A R KMLYAS+K ++E I+
Sbjct: 69 -DECRYAVYDLDFVTDENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDG--IQC 125
Query: 488 EMHATVKEEVSL 523
E+ AT E+SL
Sbjct: 126 EIQATDPSEMSL 137
>05_01_0103 + 686770-687017,687120-687270
Length = 132
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Frame = +2
Query: 284 DFDKYVPSLIEEDQPCYILYRFD---SKNSLGHEWLLLSWSPDSAPVRQKMLYASTKATL 454
++D + SL ++ Y ++ +D +N + ++WSPD++ VR KM+YAS+K
Sbjct: 45 NYDDFAASL-PANECRYAIFDYDFVTEENCQKSKIFFIAWSPDTSRVRSKMIYASSKDRF 103
Query: 455 KQEFGSAHIKDEMHATVKEEVSL 523
K+E I+ E+ AT EV L
Sbjct: 104 KRELDG--IQVELQATDPTEVGL 124
>03_06_0480 +
34218403-34218405,34219071-34219127,34220047-34220312,
34220402-34220552
Length = 158
Score = 43.6 bits (98), Expect = 1e-04
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Frame = +2
Query: 287 FDKYVPSLIEEDQPC-YILYRFD---SKNSLGHEWLLLSWSPDSAPVRQKMLYASTKATL 454
++ + SL E D C + +Y FD +++ + WSPD+A VR KMLYAS+
Sbjct: 72 YEDFTSSLPEGD--CRFAIYDFDFLTAEDVPKSRIFYILWSPDNAKVRSKMLYASSNERF 129
Query: 455 KQEFGSAHIKDEMHATVKEEVSLKGYK 535
K+E I+ E+ AT E+SL K
Sbjct: 130 KKELNG--IQLEVQATDAGEISLDALK 154
>04_04_0752 -
27791126-27791167,27791792-27791863,27792771-27792855,
27792971-27793236,27794117-27794301,27794925-27795018,
27795193-27795284,27795401-27795539,27796101-27796385
Length = 419
Score = 41.1 bits (92), Expect = 7e-04
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Frame = +2
Query: 227 ENEQLTMAKHFSTKGTWEHDFDKYVPSLIEEDQPCYILYRFD---SKNSLGHEWLLLSWS 397
E Q + G DF +P+ + Y ++ FD +N + +SWS
Sbjct: 300 ERTQQVVVDRLGQPGDTYDDFTASMPA----SECRYAVFDFDFVTDENCQKSKIFFISWS 355
Query: 398 PDSAPVRQKMLYASTKATLKQE 463
PD++ VR KMLYAS+K K+E
Sbjct: 356 PDTSKVRSKMLYASSKDRFKRE 377
>03_06_0479 + 34217170-34217172,34217337-34217786
Length = 150
Score = 41.1 bits (92), Expect = 7e-04
Identities = 22/54 (40%), Positives = 31/54 (57%)
Frame = +2
Query: 386 LSWSPDSAPVRQKMLYASTKATLKQEFGSAHIKDEMHATVKEEVSLKGYKAHLS 547
+SWSP +A VR KM+YAS+ K+E I ++ AT E++L K H S
Sbjct: 99 VSWSPAAADVRSKMVYASSNEGFKKELDGVQI--DLQATDPSELTLDVLKDHTS 150
>10_08_0658 - 19642103-19642259,19642831-19643102,19643346-19643378
Length = 153
Score = 35.9 bits (79), Expect = 0.027
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
Frame = +2
Query: 209 VLKVTIENEQLTMAKHFSTKGTWEHDFDKYVPSLIEEDQPC-YILYRFD---SKNSLGHE 376
+ K+ E++ + K G +D + SL +D C Y +Y D N +
Sbjct: 43 IFKIDDRREEIVVEK----TGAPGESYDDFTASLPADD--CRYAVYDLDFVSDDNCRKSK 96
Query: 377 WLLLSWSPDSAPVRQKMLYASTKATLKQEFGSAHIKDEMHATVKEEVSLK 526
+SWSP + +R K +YA ++ + E H E+ AT +++ L+
Sbjct: 97 IFFISWSPSVSRIRAKTIYAVSRNQFRHELDGVHF--EIQATDPDDMDLE 144
>07_02_0007 - 11675832-11675988,11676719-11676975,11676989-11677084
Length = 169
Score = 35.1 bits (77), Expect = 0.047
Identities = 26/106 (24%), Positives = 46/106 (43%)
Frame = +2
Query: 209 VLKVTIENEQLTMAKHFSTKGTWEHDFDKYVPSLIEEDQPCYILYRFDSKNSLGHEWLLL 388
+ K+ E++ + K T WE +D + SL + Y L N + +
Sbjct: 63 IFKIDDRREEIVVEK---TGAPWE-SYDDFTASLPAD--AVYDLDFVSDDNCRKSKIFFI 116
Query: 389 SWSPDSAPVRQKMLYASTKATLKQEFGSAHIKDEMHATVKEEVSLK 526
SWSP + +R K +YA + + E H E+ AT +++ L+
Sbjct: 117 SWSPSLSCIRAKTIYAVWRNQFRHELDGVHF--EIQATDPDDMDLE 160
>09_04_0321 - 16664316-16664939,16665369-16666262
Length = 505
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 350 DSKNSLGHEWLLLSWSPDSAPVRQKM-LYASTKATLKQEFGSA 475
D+ N LGH+ + ++W P S+P+ + M AST + G++
Sbjct: 113 DNANVLGHQDVSMAWLPSSSPLWKHMRTLASTLLFTSRRLGAS 155
>06_03_0220 + 18276641-18276915,18278445-18278676
Length = 168
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 508 GRSLSERLQGAFERSECSRPP 570
GR+ + R Q ERS CSRPP
Sbjct: 79 GRARAGRAQERRERSRCSRPP 99
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,230,504
Number of Sequences: 37544
Number of extensions: 330455
Number of successful extensions: 693
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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