Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16c19
         (634 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24461| Best HMM Match : No HMM Matches (HMM E-Value=.)              70   2e-12
SB_51912| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   3e-10
SB_28028| Best HMM Match : Cofilin_ADF (HMM E-Value=2e-20)             39   0.003
SB_53447| Best HMM Match : DUF924 (HMM E-Value=3.6e-17)                33   0.25 
SB_7039| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.25 
SB_38030| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_10552| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_4561| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.8  
SB_6657| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.1  
SB_30668| Best HMM Match : NIF3 (HMM E-Value=5.1)                      28   5.5  
SB_10632| Best HMM Match : DEP (HMM E-Value=0.78)                      28   7.2  
SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_24461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 32/69 (46%), Positives = 43/69 (62%)
 Frame = +2

Query: 413 VRQKMLYASTKATLKQEFGSAHIKDEMHATVKEEVSLKGYKAHLSGVSAPAPPHG*RGSL 592
           +RQKML+A T+ATLK+EFG  HIKDE+  T   +V L GY +H++   AP P       L
Sbjct: 1   IRQKMLFAGTRATLKKEFGGGHIKDELFGTNVADVCLDGYHSHMTSAKAPPPLTNEEAEL 60

Query: 593 ERVAKKANI 619
           E V K+  +
Sbjct: 61  ELVKKEEGV 69


>SB_51912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 29/65 (44%), Positives = 39/65 (60%)
 Frame = +2

Query: 425 MLYASTKATLKQEFGSAHIKDEMHATVKEEVSLKGYKAHLSGVSAPAPPHG*RGSLERVA 604
           ML+A T+ATLK+EFG  HIKDE+  T   +V L GY +H++   AP P       LE V 
Sbjct: 1   MLFAGTRATLKKEFGGGHIKDELFGTNVADVCLDGYHSHMTSAKAPPPLTNEEAELELVK 60

Query: 605 KKANI 619
           K+  +
Sbjct: 61  KEEGV 65


>SB_28028| Best HMM Match : Cofilin_ADF (HMM E-Value=2e-20)
          Length = 151

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 26/112 (23%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
 Frame = +2

Query: 164 ELKKYISKCRDSKLRVLKVTIENEQLTMAKHFSTKGTWEHDFDKYV----PSLIEEDQPC 331
           +L + +   +  K  + K+  E   + + + F +  T   + D+ +       + + +P 
Sbjct: 14  KLSQTMKSMKTHKYAIFKICDEANMVVIDQTFKSVVTNTREEDRAIFYQMVEKLSDREPR 73

Query: 332 YILY--RFDSKNS--LGHEWLLLSWSPDSAPVRQKMLYASTKATLKQEFGSA 475
           YILY  +F  K    + +  + +SW  D AP+ +KM  AST+  ++++F  A
Sbjct: 74  YILYDMKFPRKEEKRIFNNLVFISWCSDKAPIEKKMKLASTQDYVRKKFSEA 125


>SB_53447| Best HMM Match : DUF924 (HMM E-Value=3.6e-17)
          Length = 585

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +2

Query: 221 TIENEQLTMAKHFSTKGTWEHDFDKYVPSLIEEDQPCYILYRFDSKNSLGHE 376
           T E  ++  A++   K  WE D D  +  +I +DQ C  +YRF  K +  HE
Sbjct: 56  TKEQPEVEKARNDELKH-WEEDADATLALIILQDQFCRSIYRFLEKKTHDHE 106


>SB_7039| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 577

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 502 SCMHLILNMGGTKFLFQCGFR*SI*HFL-PNGCTIWG 395
           SC H+   + G +F + C    S  H+L P+GCT WG
Sbjct: 257 SCNHMTCAVCGAEFCWLCMKEISDLHYLSPSGCTFWG 293


>SB_38030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/25 (44%), Positives = 20/25 (80%)
 Frame = +2

Query: 395 SPDSAPVRQKMLYASTKATLKQEFG 469
           S D+AP++++M+ A+T   LK++FG
Sbjct: 2   SSDNAPIKKRMVSAATNELLKRKFG 26


>SB_10552| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 443 KATLKQEFGSAHIKDEMHATVKEEVSLKGYKAHL 544
           +ATLKQ   + HIK  + AT+K+    + Y  H+
Sbjct: 221 RATLKQRKYTVHIKHMLRATLKQRKYTRKYTVHI 254


>SB_4561| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/25 (44%), Positives = 20/25 (80%)
 Frame = +2

Query: 395 SPDSAPVRQKMLYASTKATLKQEFG 469
           S D+AP++++M+ A+T   LK++FG
Sbjct: 2   SSDNAPIKKRMVSAATNELLKRKFG 26


>SB_6657| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = +2

Query: 320 DQPCYILYRFDSKNSLG---HEWLLLSWSPDSAPVRQKMLYASTKATLKQEFGSAHIKDE 490
           D+P YI    D +N  G    + LL+ W P++   R KM YA T   L ++       +E
Sbjct: 64  DEPRYIGLILDYENKEGAKRSKVLLIFWCPENLNPRVKMPYAMTFNDLTKKCPHYDKSEE 123

Query: 491 MH 496
            H
Sbjct: 124 AH 125


>SB_30668| Best HMM Match : NIF3 (HMM E-Value=5.1)
          Length = 1318

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/57 (21%), Positives = 27/57 (47%)
 Frame = +2

Query: 296 YVPSLIEEDQPCYILYRFDSKNSLGHEWLLLSWSPDSAPVRQKMLYASTKATLKQEF 466
           Y+ + ++ + P     R+D  +   H W++LS+   + P R      +T+  + Q +
Sbjct: 351 YLATKLQTEDPTKWPPRYDDSSHFPHLWVVLSYDESTPPPRDGSAKPATQPFVSQPY 407


>SB_10632| Best HMM Match : DEP (HMM E-Value=0.78)
          Length = 500

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -1

Query: 550 SAQMRLVAFQRDFFLNSCMHLILNM 476
           +A +RL+AF+ D F N  +H +L++
Sbjct: 182 AAHIRLIAFRLDQFFNQMLHTLLSL 206


>SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1758

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +2

Query: 284  DFDKYVPSLIEEDQPCYILYRFDSKNSLGHEW--LLLSWSP 400
            ++ KY    IE D P  + +R   K  +  +W   +L+W P
Sbjct: 1441 NYSKYARPSIESDAPAIVTFRAKLKQIVDLQWENPILTWDP 1481


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,801,992
Number of Sequences: 59808
Number of extensions: 383869
Number of successful extensions: 876
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)