Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16c19
         (634 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U46668-2|AAA93345.2|  333|Caenorhabditis elegans Hypothetical pr...   111   5e-25
AF024494-1|AAL02462.2|  212|Caenorhabditis elegans Uncoordinated...    37   0.010
L18963-1|AAC14457.1|  152|Caenorhabditis elegans unc-60 protein.       36   0.024
AF024494-2|AAL02463.1|  152|Caenorhabditis elegans Uncoordinated...    36   0.024
U80847-7|AAO91744.1|  778|Caenorhabditis elegans Hypothetical pr...    33   0.13 
U80847-6|AAK68190.1|  796|Caenorhabditis elegans Hypothetical pr...    33   0.13 
U80847-5|AAK68189.1|  793|Caenorhabditis elegans Hypothetical pr...    33   0.13 
L18963-2|AAC14458.1|  165|Caenorhabditis elegans unc-60 protein.       33   0.17 
AF024494-3|AAL02461.1|  165|Caenorhabditis elegans Uncoordinated...    33   0.17 
U41029-2|AAL65785.1|  192|Caenorhabditis elegans Hypothetical pr...    29   2.8  

>U46668-2|AAA93345.2|  333|Caenorhabditis elegans Hypothetical
           protein F38E9.5 protein.
          Length = 333

 Score =  111 bits (266), Expect = 5e-25
 Identities = 52/146 (35%), Positives = 90/146 (61%)
 Frame = +2

Query: 131 MSHQTGIQANAELKKYISKCRDSKLRVLKVTIENEQLTMAKHFSTKGTWEHDFDKYVPSL 310
           M+ QTGI+ANA L+  ++  + +KLR++K+ + NE++T    F+    W  D+   +P  
Sbjct: 1   MACQTGIRANAALRNALNLGKQAKLRLIKIVVNNEEMTPNYEFAGTANWRDDWRACLPDC 60

Query: 311 IEEDQPCYILYRFDSKNSLGHEWLLLSWSPDSAPVRQKMLYASTKATLKQEFGSAHIKDE 490
           ++  +PC+IL+R ++      EW+L+++  D APVR+KML A+T AT K EFG  +I+ E
Sbjct: 61  VDAYEPCFILFRLNTIT----EWVLITFVDDRAPVREKMLLAATCATFKSEFGQCYIEHE 116

Query: 491 MHATVKEEVSLKGYKAHLSGVSAPAP 568
            H T  ++++L  ++A L   +   P
Sbjct: 117 KHVTDLKDLTLNAFEAWLKAKTELGP 142



 Score = 33.1 bits (72), Expect = 0.17
 Identities = 32/147 (21%), Positives = 70/147 (47%), Gaps = 7/147 (4%)
 Frame = +2

Query: 149 IQANAELKKYISKCRDSKLRVLKVTIENEQLTMAKHFSTKGTWEHDFDKYVPSLIEEDQP 328
           +  NAE  + + +    KL  ++++++    T+ +    +GT E      + S +  D+P
Sbjct: 175 VDRNAE--EALRQLASQKLSFVQLSVD----TLNEAIKLEGTLESLEPSQLASKVPRDKP 228

Query: 329 CYILYRFD-SKNSLGHEWLLLSWS-PDS-APVRQKMLYASTK----ATLKQEFGSAHIKD 487
            Y  Y FD +   +  +  L  +S P S + ++++MLY+S K    +  + ++G   I +
Sbjct: 229 RYTFYNFDHTWEGVPQQCTLFIYSLPSSGSSIKERMLYSSCKGPFLSAAQNQYGVV-ITN 287

Query: 488 EMHATVKEEVSLKGYKAHLSGVSAPAP 568
           +M    ++++S K     +  +   AP
Sbjct: 288 KMEVDARDDLSEKALLEVIHPLPVEAP 314


>AF024494-1|AAL02462.2|  212|Caenorhabditis elegans Uncoordinated
           protein 60, isoform b protein.
          Length = 212

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 21/68 (30%), Positives = 39/68 (57%)
 Frame = +2

Query: 341 YRFDSKNSLGHEWLLLSWSPDSAPVRQKMLYASTKATLKQEFGSAHIKDEMHATVKEEVS 520
           ++   ++ + H+ LL +  PD+APVR++MLYAS+   LK   G   +  ++ A+   ++ 
Sbjct: 141 FQVSDESEMSHKELLNN-CPDNAPVRRRMLYASSVRALKASLGLESL-FQVQASEMSDLD 198

Query: 521 LKGYKAHL 544
            K  K+ L
Sbjct: 199 EKSVKSDL 206



 Score = 32.3 bits (70), Expect = 0.30
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 380 LLLSWSPDSAPVRQKMLYASTKATLKQEFGSAHI 481
           + L   PD A +++KM+YAS+ A +K   G+  I
Sbjct: 105 IFLQICPDGASIKKKMVYASSAAAIKTSLGTGKI 138


>L18963-1|AAC14457.1|  152|Caenorhabditis elegans unc-60 protein.
          Length = 152

 Score = 35.9 bits (79), Expect = 0.024
 Identities = 18/55 (32%), Positives = 32/55 (58%)
 Frame = +2

Query: 380 LLLSWSPDSAPVRQKMLYASTKATLKQEFGSAHIKDEMHATVKEEVSLKGYKAHL 544
           + + + PD+APVR++MLYAS+   LK   G   +  ++ A+   ++  K  K+ L
Sbjct: 93  IFVQYCPDNAPVRRRMLYASSVRALKASLGLESL-FQVQASEMSDLDEKSVKSDL 146


>AF024494-2|AAL02463.1|  152|Caenorhabditis elegans Uncoordinated
           protein 60, isoform c protein.
          Length = 152

 Score = 35.9 bits (79), Expect = 0.024
 Identities = 18/55 (32%), Positives = 32/55 (58%)
 Frame = +2

Query: 380 LLLSWSPDSAPVRQKMLYASTKATLKQEFGSAHIKDEMHATVKEEVSLKGYKAHL 544
           + + + PD+APVR++MLYAS+   LK   G   +  ++ A+   ++  K  K+ L
Sbjct: 93  IFVQYCPDNAPVRRRMLYASSVRALKASLGLESL-FQVQASEMSDLDEKSVKSDL 146


>U80847-7|AAO91744.1|  778|Caenorhabditis elegans Hypothetical
           protein C17H11.6c protein.
          Length = 778

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 502 SCMHLILNMGGTKFLFQCGFR*SI*HFL-PNGCTIWG 395
           SC H++  M   +F + C    S  H+L P GCT WG
Sbjct: 272 SCNHMVCTMCNAEFCWLCLKEISDLHYLSPTGCTFWG 308


>U80847-6|AAK68190.1|  796|Caenorhabditis elegans Hypothetical
           protein C17H11.6b protein.
          Length = 796

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 502 SCMHLILNMGGTKFLFQCGFR*SI*HFL-PNGCTIWG 395
           SC H++  M   +F + C    S  H+L P GCT WG
Sbjct: 272 SCNHMVCTMCNAEFCWLCLKEISDLHYLSPTGCTFWG 308


>U80847-5|AAK68189.1|  793|Caenorhabditis elegans Hypothetical
           protein C17H11.6a protein.
          Length = 793

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 502 SCMHLILNMGGTKFLFQCGFR*SI*HFL-PNGCTIWG 395
           SC H++  M   +F + C    S  H+L P GCT WG
Sbjct: 272 SCNHMVCTMCNAEFCWLCLKEISDLHYLSPTGCTFWG 308


>L18963-2|AAC14458.1|  165|Caenorhabditis elegans unc-60 protein.
          Length = 165

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
 Frame = +2

Query: 380 LLLSWSPDSAPVRQKMLYASTKATLKQEFGSA-----HIKDEMHATVKEEVSLKGYK 535
           + L   PD A +++KM+YAS+ A +K   G+       + DE   + KE ++  G K
Sbjct: 105 IFLQICPDGASIKKKMVYASSAAAIKTSLGTGKILQFQVSDESEMSHKELLNKLGEK 161


>AF024494-3|AAL02461.1|  165|Caenorhabditis elegans Uncoordinated
           protein 60, isoform a protein.
          Length = 165

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
 Frame = +2

Query: 380 LLLSWSPDSAPVRQKMLYASTKATLKQEFGSA-----HIKDEMHATVKEEVSLKGYK 535
           + L   PD A +++KM+YAS+ A +K   G+       + DE   + KE ++  G K
Sbjct: 105 IFLQICPDGASIKKKMVYASSAAAIKTSLGTGKILQFQVSDESEMSHKELLNKLGEK 161


>U41029-2|AAL65785.1|  192|Caenorhabditis elegans Hypothetical
           protein F47G3.2 protein.
          Length = 192

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = -2

Query: 240 SCSFSIVTFKTRSLLSRHLL 181
           SC+FS + F+T S L+RHLL
Sbjct: 158 SCNFSSMHFRTSSTLNRHLL 177


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,227,770
Number of Sequences: 27780
Number of extensions: 307660
Number of successful extensions: 778
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)