Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16c19
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   3.3  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    22   4.3  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    22   4.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   7.5  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   7.5  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   9.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   9.9  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 121 YIYNVAPNRYSSKC 162
           Y YN+ PN+ S++C
Sbjct: 220 YCYNLTPNQPSAQC 233


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -2

Query: 321 SSSINDGTYLSKSCSHVPFVEKCLAIVSCSFSIVT 217
           +SS  D TY      +VPF E   ++    F  VT
Sbjct: 49  TSSSGDNTYTKTFKMNVPFEETLPSLPDRKFQTVT 83


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -2

Query: 321 SSSINDGTYLSKSCSHVPFVEKCLAIVSCSFSIVT 217
           +SS  D TY      +VPF E   ++    F  VT
Sbjct: 51  TSSSGDNTYTKTFKMNVPFEETLPSLPDRKFQTVT 85


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 377 IRDQGNFLNQTYIIYNKVDLPQSMMVHIYQNHAPMFL 267
           IR + N   Q+  I N+V+LPQ  ++   Q H+ + L
Sbjct: 166 IRYKWNAGLQSVGISNEVELPQFRVLGHRQRHSTIHL 202


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 514 FFLNSCMHLILNMGGTKFLFQCG 446
           F LNS +  ++  GGT  + Q G
Sbjct: 296 FSLNSILKTVVAYGGTSVMHQRG 318


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 347 FDSKNSLGHEWL 382
           FD  NSLG  WL
Sbjct: 229 FDRMNSLGLSWL 240


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 347 FDSKNSLGHEWL 382
           FD  NSLG  WL
Sbjct: 267 FDRMNSLGLSWL 278


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,520
Number of Sequences: 438
Number of extensions: 3982
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)